Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59340 445 / 9e-158 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59310 438 / 5e-155 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59320 391 / 1e-136 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 266 / 2e-88 Eukaryotic protein of unknown function (DUF914) (.1) AT3G07080 46 / 2e-05 EamA-like transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025530 [exp] 595 / 0 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10004060 [exp] 309 / 3e-104 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 264 / 2e-86 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 99 / 1e-23 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1) Lus10011864 [exp] 43 / 0.0003 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 42 / 0.0003 AT3G07080 342 / 5e-116 EamA-like transporter family (.1) Lus10006194 [exp] 42 / 0.0006 AT4G32140 610 / 0.0 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151800 [exp] 504 / 2e-180 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 494 / 1e-176 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.003G030800 [exp] 293 / 7e-98 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G189500 [exp] 48 / 7e-06 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10026744 pacid=23176583 polypeptide=Lus10026744 locus=Lus10026744.g ID=Lus10026744.BGIv1.0 annot-version=v1.0 ATGTCAAACTTAAACGAGTTCTGCACCACGAAAACGTTGGTGGGTCTTGGATTGGGGCAATTCCTCTCCCTGCTCATAACTTCTACTGGTTTCTTATCAT CCGAGCTCGCCAGAAAAGGGATCAATGCTCCAACTTCTCAATCCTTTTTAAACTATGTATTGTTAGCTGTTGTTTACGGGGGCGTTATGCTATATAGGAA ACAAAAACTTAAGGCTAAATGGTACTACTATTTGATTCTTGGAGTGATAGACGTGGAGGCCAATTTTCTTGTGGTGAAGGCCTATCAGTACACCTCTCTC ACGAGTGTAATGTTGCTGGATTGTTGGGCGATTCCGTGTGTGATGCTTCTTACCTGGTTGTTTCTCAAGACAAAGTATAGATTCAAGAAGATATCTGGAG TTTTAGTGTGTGTGGCTGGTCTTGTTCTTATTGTTTTCTCAGACGTTCATGCTGCTGATAGATCATCAGGAGGAAGCAAGCCTTTGTTAGGAGATGTTCT AGTCATTGCTGGGGCAACTCTGTATGCATTCAGTAACGTCAGTGAGGAGTTTCTCGTCAAGAGTGCTGACAGAGTTGAACTCATGGCCCTGCTGGGTTTT TTCGGCGCCATTATCAGTGCTATCCAAATAGCCATTTTGGAGCGTAGCGAGCTGAGATCAATTCACTGGTCAGCTGGAGCCGCTCTTCCATTTGTTGGCT TTTCTTTGGCGATGTTTCTGTTCTACTCTCTGGTCCCTATTCTGCTTAAGATTAACGGGTCCACAATGCTCAACCTGTCATTACTATCGTCGGACATGTG GGCTGTGTTGATTCGCATCTTTGCATACCATCAGAAGGTCGATTGGATGTACTTCCTCGCATTTGGTGCCGTGGCTGTTGGTTTGGTCATCTACTCAAGA GGCGAGAAAGACGAAGACGAATCTGGAGATGAGGGAGACGGAAATGCAGAGAGAAGCAAACGAGATGAGGAAGCTGGGTTGGCAGGTCACAGTAGAGGAA CAGCTGCAGGGAGTAGCTCAAAACAATGA
AA sequence Show only first row Show all	>Lus10026744 pacid=23176583 polypeptide=Lus10026744 locus=Lus10026744.g ID=Lus10026744.BGIv1.0 annot-version=v1.0 MSNLNEFCTTKTLVGLGLGQFLSLLITSTGFLSSELARKGINAPTSQSFLNYVLLAVVYGGVMLYRKQKLKAKWYYYLILGVIDVEANFLVVKAYQYTSL TSVMLLDCWAIPCVMLLTWLFLKTKYRFKKISGVLVCVAGLVLIVFSDVHAADRSSGGSKPLLGDVLVIAGATLYAFSNVSEEFLVKSADRVELMALLGF FGAIISAIQIAILERSELRSIHWSAGAALPFVGFSLAMFLFYSLVPILLKINGSTMLNLSLLSSDMWAVLIRIFAYHQKVDWMYFLAFGAVAVGLVIYSR GEKDEDESGDEGDGNAERSKRDEEAGLAGHSRGTAAGSSSKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	0	1
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	1.0	0.9846
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	4.5	0.9640
AT1G05060			unknown protein		Lus10030021 [exp]	6.6	0.9609
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	8.5	0.9640
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	8.7	0.9473
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	10.0	0.9374
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	11.2	0.9306
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	12.0	0.9510
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	14.7	0.9593
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	16.7	0.9547

Compare expression of checked genes

Lus10026744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.