Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19640 330 / 2e-110 MRS2-3, MGT4 magnesium transporter 4 (.1) AT1G16010 196 / 5e-59 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 190 / 1e-56 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G09690 159 / 2e-45 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G58970 150 / 9e-42 MRS2-4, MGT6 magnesium transporter 6 (.1) AT2G03620 148 / 4e-41 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G64560 119 / 1e-30 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT4G28580 110 / 3e-27 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09710 94 / 2e-21 Magnesium transporter CorA-like family protein (.1) AT5G09720 61 / 3e-10 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025531 [exp] 387 / 5e-134 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10026063 [exp] 196 / 8e-59 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 196 / 8e-59 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10037081 [exp] 162 / 7e-47 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10024860 [exp] 157 / 2e-44 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10021887 [exp] 151 / 3e-42 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 149 / 2e-40 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10015459 [exp] 145 / 2e-39 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10008803 [exp] 123 / 1e-31 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086300 [exp] 367 / 2e-125 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 234 / 4e-74 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.007G098000 [exp] 213 / 1e-65 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.001G043200 [exp] 191 / 6e-57 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 189 / 4e-56 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G291932 [exp] 160 / 3e-49 AT3G19640 150 / 1e-44 magnesium transporter 4 (.1) Potri.010G158100 [exp] 156 / 5e-44 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.008G096200 [exp] 156 / 6e-44 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.008G161400 [exp] 153 / 4e-43 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 145 / 4e-40 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10026745 pacid=23176638 polypeptide=Lus10026745 locus=Lus10026745.g ID=Lus10026745.BGIv1.0 annot-version=v1.0 ATGCAAGATTCACAAGGGCCAAAATCAAGTACTGGAAGTCCTGAAAATTTTCCTGATCATTCATTACTTGCTCAAGATCATGAAGAAGGGAGGATGGGAG ATGGGAGGCAGAGCATGGAGAATCGTGATGGATCGAAGGTTCTCCCGTTTGAGTTTGTAGCTTTAGAAGCATGCTTGGAAGCTGCATGTGGCTGCTTAGA AATTGAAGCAAAAACTTTGGAGCAAGAAGCGCATCCTGCATTGGATAAGCTGACTTCAAAAATCAGTACTCTCAACTTAGAACGTGTCCGGCAAATTAAG AGTCGGTTAGTGGCAATTACCGGTCGAGTGCAAAAGGTTAGGGATGAACTCGAGCACGTGCTTGATGACGACGAGGACATGGCTGAAATGTACCTGACAG AAAAGTTAGCCAGCATGGAAAACTCGACTGCTTCTTCTTTCAGCGATGGAGATGAAATGGAAGATGATCTGCCACCTGCGATGGACGACAACCCGAATGC TGAAGCCTCTAGGGAAGGTCATGGTGCTTCCACCAGCTACGATCCAGATATTCAAACGGCTGACCACACAAACGACCATCCTTACAGCGTACATGGTGCA CTTAGCCGCACACTCACTAGTACCACTAGGAGTGCTGTAAGCAAGCACCTTGATGTCGAGGAGCTAGAAATGCTTCTCGAAGCATACTTCGTGCAGATTG ACGGAACGCTTAACAAACTGTCCACGCTGAGGGAGTATGTAGACGACACGGAGGACTACATCAACATCATGCTCGACGACAAGCAGAATCACCTGCTGCA AATGGGCGTTATGTTGACGACAGCTACATTAGTGATCAGCTTCTTTATCGTGGTAGCTGGTATATTTGGCATGAACATCAACATCGAGTTGTTTAACGAA GAAGTGGAAACGGGGATGCCGAAGTTTATGTGGACAGTTGGTGGAAGCACCATCGGGACCATTGTCCTGTACGTGATTGCGATCGCCTGGTGCAAGCACA AGAGGCTGTTGGAGTAA
AA sequence Show only first row Show all	>Lus10026745 pacid=23176638 polypeptide=Lus10026745 locus=Lus10026745.g ID=Lus10026745.BGIv1.0 annot-version=v1.0 MQDSQGPKSSTGSPENFPDHSLLAQDHEEGRMGDGRQSMENRDGSKVLPFEFVALEACLEAACGCLEIEAKTLEQEAHPALDKLTSKISTLNLERVRQIK SRLVAITGRVQKVRDELEHVLDDDEDMAEMYLTEKLASMENSTASSFSDGDEMEDDLPPAMDDNPNAEASREGHGASTSYDPDIQTADHTNDHPYSVHGA LSRTLTSTTRSAVSKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISFFIVVAGIFGMNINIELFNE EVETGMPKFMWTVGGSTIGTIVLYVIAIAWCKHKRLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10026745 [exp]	0	1
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	29.3	0.5623
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	35.7	0.5460

Compare expression of checked genes

Lus10026745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.