Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19640 171 / 1e-51 MRS2-3, MGT4 magnesium transporter 4 (.1) AT1G16010 128 / 1e-35 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09690 124 / 7e-35 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G80900 124 / 4e-34 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G64560 119 / 7e-33 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT2G03620 116 / 3e-31 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09720 113 / 5e-31 Magnesium transporter CorA-like family protein (.1) AT3G58970 110 / 3e-29 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G09710 76 / 6e-17 Magnesium transporter CorA-like family protein (.1) AT4G28580 72 / 3e-15 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025531 [exp] 281 / 2e-95 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10014353 [exp] 130 / 2e-36 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 130 / 2e-36 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10008803 [exp] 127 / 1e-35 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10021887 [exp] 127 / 2e-35 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 128 / 6e-35 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10036901 [exp] 119 / 7e-33 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10024860 [exp] 113 / 2e-30 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10037081 [exp] 93 / 8e-23 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G291866 [exp] 221 / 4e-74 AT3G19640 167 / 3e-49 magnesium transporter 4 (.1) Potri.001G291600 [exp] 187 / 9e-62 AT3G19640 145 / 4e-42 magnesium transporter 4 (.1) Potri.009G086300 [exp] 180 / 2e-55 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 147 / 5e-43 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.007G098000 [exp] 136 / 9e-39 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.008G161400 [exp] 129 / 2e-36 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 128 / 4e-36 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.001G043200 [exp] 129 / 5e-36 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 128 / 1e-35 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G096200 [exp] 112 / 1e-29 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026746 pacid=23176640 polypeptide=Lus10026746 locus=Lus10026746.g ID=Lus10026746.BGIv1.0 annot-version=v1.0 ATGAGGCCTAATCTGACTCCACTGTCCAAACCCAATGACGTTGACACAGACCCACTGAGCCGGCCAGCCACTACCCTCATTACTGCCCGCAAGAAAGGCA CCGGTGTTCGGGCATGGCTCCTGCTGGATTCAACCGGTCAGACCCAGGTGGTGGAGGCTGGGAAGCATGCCATCATGCGCCGCACAGGGTTACCTGCCCG TGACCTTCGAATCCTTGACCCCCTTCTGTCATACCCTTCCACTGTATTGGGTCGTGAGCGGGCGATTGTCATCAATCTAGAGCATATCAAGGCGATCATA ACCGCCCAGGAGGTTCTGTTACTGAATTCCAAGGACCCTTCTGTCACTCCCTTTGTCGAAGAGCTGCAAAAGAGGATTTCTTTCCATTACCAAGCTACCA AGGCACAGGTACTGAATATTTATGCTTTGTTGCTCCTTTCGATGTTGATTAAATTGTGGGTTAGTGATGGATTGTGA
AA sequence Show only first row Show all	>Lus10026746 pacid=23176640 polypeptide=Lus10026746 locus=Lus10026746.g ID=Lus10026746.BGIv1.0 annot-version=v1.0 MRPNLTPLSKPNDVDTDPLSRPATTLITARKKGTGVRAWLLLDSTGQTQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAII TAQEVLLLNSKDPSVTPFVEELQKRISFHYQATKAQVLNIYALLLLSMLIKLWVSDGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10026746 [exp]	0	1
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	4.9	0.9154
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	7.9	0.9270
ATMG00650		ATMG00650.1, NA...	NADH dehydrogenase subunit 4L ...		Lus10004838 [exp]	14.9	0.9152
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	22.5	0.9132
AT5G27970			ARM repeat superfamily protein...		Lus10004116 [exp]	23.3	0.9124
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	26.7	0.9120
					Lus10008200 [exp]	26.8	0.9107
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016374 [exp]	28.9	0.9109
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	34.0	0.8903
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	34.1	0.9120

Compare expression of checked genes

Lus10026746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.