Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06710 1175 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 282 / 4e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 281 / 7e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 275 / 8e-80 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 269 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 272 / 7e-78 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 265 / 3e-76 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 264 / 4e-76 RPF2 rna processing factor 2 (.1) AT1G63130 263 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 262 / 1e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025533 [exp] 1405 / 0 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025532 [exp] 350 / 2e-113 AT1G06710 114 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 300 / 1e-86 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 298 / 9e-86 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 296 / 5e-85 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 294 / 8e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 279 / 2e-80 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 282 / 3e-80 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 276 / 7e-78 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123600 [exp] 1426 / 0 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 316 / 3e-91 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 301 / 1e-88 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 301 / 1e-88 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 293 / 9e-87 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G014100 [exp] 297 / 1e-85 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 285 / 7e-84 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 285 / 8e-84 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 288 / 3e-81 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G050400 [exp] 278 / 3e-81 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026747 pacid=23176573 polypeptide=Lus10026747 locus=Lus10026747.g ID=Lus10026747.BGIv1.0 annot-version=v1.0 ATGAGAAGGTGGGTTGCTAAGACTCTTCTTCAATCGCGTTCCCTTCCATTTCCAATCAGTCACTCGAAAACCAGGTTGCTCACAAGTTCTTCCTCCGACA ATCTGGAAGGTTTGGTTGACCCGGATGACCTTTCTCTCTCAGGGCCAGAGTCAATTTCCAGTGAAGAGTTTACTCTTCTGCGGGATTCTTTATTGAACCC TCATTCTTCTTCTTCTTCTTCTTCTTCTGCTGGTAAGTTCTCAGATGAAGCGTTGATGGTTGTTGATGTGATCTTGAGTGTTAATGATCAGTTTGGTAAA GAAACCGTGAAGTTGCTCAGGCGGCATAGGGAGAAGTTAAGCGAGTCTTTGGTGATTGAGGTTCTGAATTTGCTCAATAGCCCTGAACTAGGTCTTAGAT TCTTCATATGGGCTGGCCAGCAAATCGGATATTCCCACACTTTACCTGTGTACAATGCGCTACTAGAGTTGTTGCAGAGAAATAATAGTGCTGCTGGAGG TAGAATACCAGAGCAGTTCCTGCTGCAAATCGAAGGTGGTGATGACAAGGAAGTTCTAGGGAAGTTACTTAACGTGTTGATTCGCAAATGTTGTCGCAAC GGTTTGTGGAATGTTGCTCTGGAGGAGCTAGGTAGACTTAAGGATTATGGATACAAGCCGTCGAGATCGACTTACAATGCTTTGGTCCAAGTGTTCCTCA GAGCTGAAAGGTTAGACACTGCTTCTCTGCTTCATAAAGAAATGTCAGGTTTAGGGTATGCAATGGATGGTTTTACTTTGGGATGTTTTGCTCGTTCTCT TTGTAAAGCTGGGAAATGGAGAGAGGCATTGAAGTTAATTGAGGATGCGGAATTCAAACCTGATACTGTGCTTTTTACCAACATGATATCTGGATTGTGT GAAGCCTCGCTCTTTGAAGTAGCTATGGATTTCTTAACAAGAATGCGAGTTTATTCTTGTATCCCTAATGTTCTGACTTATAGGATTTTGCTCTGTGGGT GTTTGAGAAAGAAACAGCTTGGTAGATGTAAAAGAATTTTGAATATGATGATTACAGAAGGATGCTATCCAAGTCCAGCCATTTTTAACTCTTTAGTTAA TGCTTATTGCAAATCGAGGGATTATGCTTACGCTTATAGGCTTATTAAGAAAATGATGGAATGTGGGTGCCAGCCGGGTTACATAGTCTACAACATATTT ATTGGTGGTGTTTGTGGAAATCGGGAGTTGCCTGAGGCGGGTGCCCTTGAGTTGGCTGAAAAAGCATATGGGGAAATGCTCGATGCGGGAGTCACATTGA ATAAGGTCAACGTTAGCAACCTTGCATGGTGTCTTTGTGGTGCTGGGAAATTCGAGGAGGCATATCGTCTCATTAGTGAAATGATGAGCAAGGGCTTTAT ACCAGATACCAGTACATATTCCCAGGTCATTACTTGTCTCTGTAATTCGGCAAAAGTAGAAAAGGCCTTTCTATTATTTCAAGAAATGAGGAAGAATGGA GTTCCGCCAGATGTGTACACATATACGCAATTGATCGACAGTTTTTGTAAGGTAGGTTTACTAGAACAGGCTCGCAGGTGGTTTGATGAAATGGATGAAA ATGGATGTGCCCCTAATGTAGTGACTTACACAGCACTTATACATGCTTACCTTAAAGCAAGGAAGGTGTCCGATGCAAACCAAATTTTTGAGCTAATGTT GTCCAAGGGCTCTGTTGCTAATGTCGTTACATATACAGCACTAATCGATGGACATTGTAAAGCAGGAGAGATCGAGACGGCTTGCAAAATATATGCTAGA ATGAAACAGGACAATGTTGAAAATTCGGATGTGGAGTTGTATTTTGGGGTGATTGATACAGAGTCCGAGGAGCCAAATCATTTCACGTATGGAGCTTTGG TTGACGGCCTATGCAAAGCTCATAAGATCAAAGAGGCCCGTGAGTTATTAGAAGCGATGTCAGTAAGTGGTTGTCAGCCTAATCATATCATCTATGATGC ACTTTTAGATGGATGTTGCAAGATCGGTAAGCTAGATGAGGCGCAAGAGGTGTTTACCATGATGATAGAGCATGGATACAATCCAAATGTATATTCATAC AGCTCTTTGATAGACAGGTTGTTTAAAGATAAGCGATTAGATCTCGCCTTGAAAGTCCTGTCCAAAATGCTTGAGAATTCTTGTGCTCCTAATGTTGTTA TCTACACTGAAATGATTGACGGTCTATGCAAAGTTGGAAAAACTGATGAAGCATATAAACTTATGGTTATGATGGAAGAAAAGGAGTGTCATCCAAATGT TGTCACCTATACTGCAATGATTGATGGGTTTGGGAAAGCTGGGAGACTTGACAAATGCCTTCAACTGTTTCAAAAGATGGCTTCCAAGGGCTGTGCTCCA AATTTTGTCACTTATAAGGTTCTGATAAACCATTGTTGTGCAGCCGGCCTATTGGATGAGGCTCTTAAACTCTTGGAAGAGATGAAAGAGACACACTGGC CAAAGCATGTAGCAGGTTATTGTAAAGTCATTGAAGGATTCAATCGAGAATTTATTGCTTCTCTGGATCTGTTGGATGAGTTTAGTGAAAAGGAAACAGT ACCTGTTTCCCCTATTTACAGGGTTCTGATCGATAGTTTTGCCAAGGCCGGAAGACTGGAGAAAGCTTTAGAACTGTACAAAGAAGTCTCATCGCTCTTA GCACCATCAGCAGCTAACCGGAATATGTATATTTCCTTAATAGAGGGCCTTGCACTTGCTAATAGGGTCGATAAGGCCTTTGATTTGCATGTCGACATGA CTTTAAAAGGCATCATTCCTGAGGTAGGCACCGTCGTCCATGTGATCAAAGGTCTTTTGAGATTAAACAGGTGGGATCAAGTACTGCAGCTTTCGGATGG AATATGCCAGGCGGATAATGAAAATGCATCCCCAGAGTTCTGCCATACCGAGAAGTCACTGAGAGTTGACAATGAGCAGTCCCAACCTTCCACTGAAAGG ACTGAGGTGATGTCAATCCCTCCAACACGAATTTGGAAACAGTTGATCATGTGTCTTCTGGTGCAGAAAACCATCATGCTCTCCAAGAAACTAGCATTGA TAAACAAGTTCGAATCAGGCATCTCTAAAAGCTGCAAAATCAAAGCAATCAGGCAGCTGGCGCAAATGATTTCACGAGGAGGCAACAAGCAGCAACCTTT GGTTCTGGAAGCAAACATTGACACTCTGAGACAAGACGATGAGATAATCGAGCCTGCATCGTTGTATAATCTAGAACTCAAGAGTTTCAAGGGTGATTGT ATGAGCCAGGTGCTATCTTTTCCCAAGGCTAGAATGTTCCTCACATTAGGTGATATTAATCAGATAAATGACTCAACAGCACAGCTTCTATAG
AA sequence Show only first row Show all	>Lus10026747 pacid=23176573 polypeptide=Lus10026747 locus=Lus10026747.g ID=Lus10026747.BGIv1.0 annot-version=v1.0 MRRWVAKTLLQSRSLPFPISHSKTRLLTSSSSDNLEGLVDPDDLSLSGPESISSEEFTLLRDSLLNPHSSSSSSSSAGKFSDEALMVVDVILSVNDQFGK ETVKLLRRHREKLSESLVIEVLNLLNSPELGLRFFIWAGQQIGYSHTLPVYNALLELLQRNNSAAGGRIPEQFLLQIEGGDDKEVLGKLLNVLIRKCCRN GLWNVALEELGRLKDYGYKPSRSTYNALVQVFLRAERLDTASLLHKEMSGLGYAMDGFTLGCFARSLCKAGKWREALKLIEDAEFKPDTVLFTNMISGLC EASLFEVAMDFLTRMRVYSCIPNVLTYRILLCGCLRKKQLGRCKRILNMMITEGCYPSPAIFNSLVNAYCKSRDYAYAYRLIKKMMECGCQPGYIVYNIF IGGVCGNRELPEAGALELAEKAYGEMLDAGVTLNKVNVSNLAWCLCGAGKFEEAYRLISEMMSKGFIPDTSTYSQVITCLCNSAKVEKAFLLFQEMRKNG VPPDVYTYTQLIDSFCKVGLLEQARRWFDEMDENGCAPNVVTYTALIHAYLKARKVSDANQIFELMLSKGSVANVVTYTALIDGHCKAGEIETACKIYAR MKQDNVENSDVELYFGVIDTESEEPNHFTYGALVDGLCKAHKIKEARELLEAMSVSGCQPNHIIYDALLDGCCKIGKLDEAQEVFTMMIEHGYNPNVYSY SSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKECHPNVVTYTAMIDGFGKAGRLDKCLQLFQKMASKGCAP NFVTYKVLINHCCAAGLLDEALKLLEEMKETHWPKHVAGYCKVIEGFNREFIASLDLLDEFSEKETVPVSPIYRVLIDSFAKAGRLEKALELYKEVSSLL APSAANRNMYISLIEGLALANRVDKAFDLHVDMTLKGIIPEVGTVVHVIKGLLRLNRWDQVLQLSDGICQADNENASPEFCHTEKSLRVDNEQSQPSTER TEVMSIPPTRIWKQLIMCLLVQKTIMLSKKLALINKFESGISKSCKIKAIRQLAQMISRGGNKQQPLVLEANIDTLRQDDEIIEPASLYNLELKSFKGDC MSQVLSFPKARMFLTLGDINQINDSTAQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	0	1
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	4.6	0.7397
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	6.5	0.7762
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	7.5	0.7564
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	8.5	0.7924
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	9.1	0.6604
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025533 [exp]	10.7	0.6877
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	15.4	0.7804
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	15.7	0.7239
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	26.1	0.7245
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	26.5	0.6993

Compare expression of checked genes

Lus10026747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.