Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19890 398 / 2e-139 Peroxidase superfamily protein (.1) AT5G06730 340 / 3e-116 Peroxidase superfamily protein (.1) AT5G06720 334 / 3e-114 ATPA2 peroxidase 2 (.1) AT4G36430 328 / 5e-112 Peroxidase superfamily protein (.1) AT2G38390 325 / 1e-110 Peroxidase superfamily protein (.1) AT2G18150 322 / 2e-109 Peroxidase superfamily protein (.1) AT2G38380 317 / 3e-107 Peroxidase superfamily protein (.1) AT2G18140 316 / 7e-107 Peroxidase superfamily protein (.1) AT4G08780 308 / 1e-103 Peroxidase superfamily protein (.1) AT4G08770 308 / 1e-103 Prx37 peroxidase 37, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025535 [exp] 627 / 0 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10027989 [exp] 327 / 9e-111 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10004163 [exp] 325 / 1e-110 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10008168 [exp] 321 / 2e-108 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027984 [exp] 320 / 4e-108 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 318 / 2e-107 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008167 [exp] 316 / 2e-106 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10027983 [exp] 312 / 4e-105 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10008174 [exp] 310 / 2e-104 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214500 [exp] 442 / 6e-157 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 340 / 2e-116 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214700 [exp] 340 / 5e-116 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 337 / 3e-115 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011200 [exp] 328 / 9e-112 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 322 / 2e-109 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 321 / 5e-109 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 317 / 2e-107 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 317 / 2e-107 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 315 / 1e-106 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10026748 pacid=23176570 polypeptide=Lus10026748 locus=Lus10026748.g ID=Lus10026748.BGIv1.0 annot-version=v1.0 ATGAATCAGAGTCCTAGTAGTTCATCACCATCATTGACCATACTATTGTTGCTAATGACCTCGAGCATGGTTACGAATGTCGAATCCCAACTCAGAGTCG ATTACTATGCATCAACATGCCCGAAACTCGCCCAGATCGTGCGTAGGGAAGTGATGAATGCAATCAAGGCCGAAACACGGATGGCAGCCTCCTTGCTCCG CCTTCATTTCCACGATTGCTTTGTCAACGGATGTGACGGTTCTCTTTTGTTGGATGGGAGTGACAGTGAGAAGTTAGCGAGGCCTAACTTGAACTCGGCC AGGGGGTTCGAAGTTGTGGACTCGATCAAAACGGCAGTGGAAAGCCAGTGCAGTGGTGTCGTATCTTGTGCTGACATTCTTGCCTTGGCTTCCCGCGATT CCGTGCTCTTGAGTGGAGGCCCGTCGTGGAAAGTGCCGCTAGGGAGAAAAGATGGGCTTGTGGCTAATCAGACTGCTGCTAATGGGCTACCAGGCCCATT TGATAACCTAACTCTCATCATAACCAAGTTTTCAGCAGTTGGCCTTGATGATCTCGCCGATGTCATCTCCTTATCAGGTGGGCACACAATTGGACAGGCA AAATGTGCCACATTCAGCAACAGACTTGTCAACTTCAGTCAAACCGGGTCCCCGGATCCGACAATGGAGTCCAACTTAGTCGCCGAACTCCAAACATTGT GCCCGGTGAACGGCGACGGCAACGTCACGACTGCTTTCGACAAGGGCTCCACTGACTTATTCGACAACCACTACTTCCAGAACCTCGTCAACAACAAAGG GATTCTGACCTCCGACCAGGTGTTGTTCTCCGGCAACGAGGCCGCCACCGCAGCCGCCAGGAACCTCGTCCAGATCTACAGCGTCAATCAGTTTAGATTC ATGGGCGACTTTGTCAAGTCGATGATTCGGATGGGGAACATTGGTCCGATTACTGGGTCTGATGGTGAGATCAGGAAGAATTGTAGGGTAGTTAATTCAG GTTGA
AA sequence Show only first row Show all	>Lus10026748 pacid=23176570 polypeptide=Lus10026748 locus=Lus10026748.g ID=Lus10026748.BGIv1.0 annot-version=v1.0 MNQSPSSSSPSLTILLLLMTSSMVTNVESQLRVDYYASTCPKLAQIVRREVMNAIKAETRMAASLLRLHFHDCFVNGCDGSLLLDGSDSEKLARPNLNSA RGFEVVDSIKTAVESQCSGVVSCADILALASRDSVLLSGGPSWKVPLGRKDGLVANQTAANGLPGPFDNLTLIITKFSAVGLDDLADVISLSGGHTIGQA KCATFSNRLVNFSQTGSPDPTMESNLVAELQTLCPVNGDGNVTTAFDKGSTDLFDNHYFQNLVNNKGILTSDQVLFSGNEAATAAARNLVQIYSVNQFRF MGDFVKSMIRMGNIGPITGSDGEIRKNCRVVNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	0	1
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	1.7	0.9511
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	2.4	0.9333
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	6.0	0.9190
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	7.3	0.9484
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	7.5	0.9257
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	10.3	0.8719
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	10.4	0.9436
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	12.5	0.9434
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018303 [exp]	13.1	0.8185
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	13.4	0.9034

Compare expression of checked genes

Lus10026748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.