Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27040 1233 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 1163 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT5G21030 967 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G32940 865 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT2G27880 452 / 2e-144 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G43810 444 / 2e-141 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 443 / 2e-140 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT1G69440 346 / 1e-104 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 310 / 4e-91 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 303 / 9e-88 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025537 [exp] 1478 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10035331 [exp] 989 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10015155 [exp] 977 / 0 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 935 / 0 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10000295 [exp] 566 / 0 AT2G27040 514 / 2e-175 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Lus10031331 [exp] 452 / 2e-143 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 445 / 1e-142 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 445 / 2e-141 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10017983 [exp] 444 / 3e-139 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219700 [exp] 1374 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 1224 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 1220 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 1214 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.014G159400 [exp] 1018 / 0 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.009G001500 [exp] 449 / 2e-143 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 449 / 3e-143 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 450 / 8e-143 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 448 / 4e-142 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.008G158800 [exp] 443 / 5e-141 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10026750 pacid=23176616 polypeptide=Lus10026750 locus=Lus10026750.g ID=Lus10026750.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTTGATCCAGATGGGAACGAGTTGCAGGAAGGCAATGGATCTGAACAGGCATTGCCACCTCCCCCACCCATCGTTCCACCAGATGTGGTTC CTCTCAAAGCAGATGCTGAGCCAGATGTGGTTCCTCTCAAAGTAGTTACTGAGCCAGTGAAGAAGAAGCCTGCACGTCTGCCCATGGCTAGGCGTGGCTC TGGATCCAAAGGACAGAAGATAACTCTGCTGACCAATCACTTCAAAGTGAATGTGTCCAACATGGATGGTGATTTCTACCATTACAGTGTTGCTCTATTG TATGAAGATGGGCGCCCTGTGGAGGCTAAAGGTGTAGGGCGAAACAATGGGCATGCAAGCCCTGATGGACATGGTACGGAAAATGAGACTGATCGCAAGA GGTTGCGACGTCCTTACAACTCCAAGTCATTCATAGTCCAGCTAAATTTTGCTGCCAAAATTCCCATGAAAGCAATTGCAAGTGCATTGAAAGGGATAGA GACTGAAAATTCCCAAGAAGCATTGCGGGTGTTAGATATCATACTAAGGCAGCATGCAGCAAAACAGGGCTGCCTCCTGGTACGCCAGTCATTTTTCCAT AATGACCCGAAGAACTTTGTGGACCTGGGAGGTGGGGTTTTAGGTTGCCGAGGCTTCCACTCCAGTTTTCGAACTACCCAAGGAGGATTGTCTTTGAACA TCGATGTCTCAACCACCATGATTATTCAGCCTGGGCCTGTGGTGGATTTTCTAATCAGTAACCAGAATGCCAGAGATCCATTTGGTCTGGATTGGGGCAA GGCTAAAAGGGTGTTGAAAAATCTGAGGATTAAAGTTAGCCCGACCAACCAAGAGTACAAGATAACAGGATTAAGTGACCAACCTTGCAAAGAGCAAATG TTCGAACTGAGACAGAAAGGCGAGGCTGATCCTATTCAAATAACTGTGTATGACTACTTTGTCAACAACCGGAACATGGATTTGCGCTATTCAGGGGATC TACCTTGCATAAATGTTGGGAAGCCTAAGCGCCCGACATACATTCCTTTGGAGCTATGCTCCTTGGTTTCTCTTCAACGGTACACAAAGGCTCTGACCAA TTTCCAGCGTTCTTCACTGGTGGAGAAATCAAGACAAAAACCACAAGAGAGGATGAGTGTTTTGTCTAATTCTCTTAAAACAAGCAAATATGAAGCAGAA CCGATGCTCCGCTCATGTGGCATTTCTATTGGTACCAGTTTTCTTCAAGTGGAAGGCCGTGTCCTACCTGCCCCAAAGGTTGGAAATGGAGATGATCTAT ATGCCCGTAATGGCAGGTGGAATTTTAACAATAAGAGATTAGTTGAGCCAGTCAAAGTTGAGAGATGGGCTGTTGTTAACTTCTCAGCCCGGTGCGATAC ACGCAGACTTATCCCTGATCTACTGAGATGTGCAGAGGCTAAGGGGATTGGCATGGAATCGCCTTTTGATGAAGTAATTGAGGAAAATCGACAGATGAGT CGTGCTCCTCCTACAGTGAGAGTGGAGAAGATGTTTGAGGCAATCAAGGCTAAGCTTCCTGGAGCTCCAAAGTTCCTTTTATGTATACTCCCTGAGAGGA AAAACTGCGATATTTATGGCCCTTGGAAGCGGAAATGCCTTTCTGATTTTGGAATTTTTACTCAATGTTTGGCTCCTACAAAGGTGAATGATCAGTATCT GACAAATCTTCTGCTGAAGATCAATGCCAAGCTCGGTGGGTTGAATTCATTGCTGGCTGTTGAGCACATTCCATCTATACCGATTGTTTCTAAGGTTCCC ACAATGATTCTTGGTATGGATGTGTCTCATGGTTCACCTGGGCAGTTTGATGTTCCTTCAATTGCTGCGGTCGTAAGCTCTCGGAAGTGGCCGTTGATCT CTAAATATAGGGCTTCAGTCAGGACTCAGTCTCCTAAAGTTGAAATGATTGATTCTCTATTTAAGAAAGTCGACGCTGACGATCATGGCATCATTAGGGA AGCACTTCTGGACTTTTATGTGAGTTCACAGAAAAGGAAACCTGAGCAGATCATCATTTTCAGGGATGGTGTCAGTGAATCCCAGTTTAACCAAGTGCTG AACATTGAACTGGATCAAATAATTGAGGCTTGTAAGTTCCTGGATGAGAAATGGGATCCCAAGTTTGTGGTTATTGTTGCTCAGAAGAACCACCATACAA AGTTCTTCCAGCAAGGGTCTCCTGACAATGTTCCACCTGGAACTATCATTGACAACAAAGTTGGTCATCCGAAGAACAATGATTTCTATCTCTGTGCACA TGCTGGGATGATTGGAACTACTCGTCCTACTCATTATCATGTTTTGATGGACGAGGTTGGTTTCTCAACTGATGATCTTCAGGAGCTTGTGCACTCTTTA TCCTATGTGTATCAAAGAAGCACAACTGCCATTTCTGTAGTTGCTCCAATCTGCTATGCCCACTTGGCAGCAAGTCAAATGGGACAATTCATTAAGTTCG ATGAAGCTTCCGAGACTTCTTCAAGCAAGGGCGGGAGTGGGATGTCGTCAGCTGGACCTGTGGCTGTCCCGCAGCTCCCGAGACTCGAGGAGAAGGTGGC CAACTCCATGTTCTTCTGTTAA
AA sequence Show only first row Show all	>Lus10026750 pacid=23176616 polypeptide=Lus10026750 locus=Lus10026750.g ID=Lus10026750.BGIv1.0 annot-version=v1.0 MASVDPDGNELQEGNGSEQALPPPPPIVPPDVVPLKADAEPDVVPLKVVTEPVKKKPARLPMARRGSGSKGQKITLLTNHFKVNVSNMDGDFYHYSVALL YEDGRPVEAKGVGRNNGHASPDGHGTENETDRKRLRRPYNSKSFIVQLNFAAKIPMKAIASALKGIETENSQEALRVLDIILRQHAAKQGCLLVRQSFFH NDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLISNQNARDPFGLDWGKAKRVLKNLRIKVSPTNQEYKITGLSDQPCKEQM FELRQKGEADPIQITVYDYFVNNRNMDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTNFQRSSLVEKSRQKPQERMSVLSNSLKTSKYEAE PMLRSCGISIGTSFLQVEGRVLPAPKVGNGDDLYARNGRWNFNNKRLVEPVKVERWAVVNFSARCDTRRLIPDLLRCAEAKGIGMESPFDEVIEENRQMS RAPPTVRVEKMFEAIKAKLPGAPKFLLCILPERKNCDIYGPWKRKCLSDFGIFTQCLAPTKVNDQYLTNLLLKINAKLGGLNSLLAVEHIPSIPIVSKVP TMILGMDVSHGSPGQFDVPSIAAVVSSRKWPLISKYRASVRTQSPKVEMIDSLFKKVDADDHGIIREALLDFYVSSQKRKPEQIIIFRDGVSESQFNQVL NIELDQIIEACKFLDEKWDPKFVVIVAQKNHHTKFFQQGSPDNVPPGTIIDNKVGHPKNNDFYLCAHAGMIGTTRPTHYHVLMDEVGFSTDDLQELVHSL SYVYQRSTTAISVVAPICYAHLAASQMGQFIKFDEASETSSSKGGSGMSSAGPVAVPQLPRLEEKVANSMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	0	1
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	1.0	0.9552
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	2.2	0.9290
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	2.4	0.9274
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	2.4	0.9323
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	2.8	0.9390
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	2.8	0.9200
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	4.9	0.9304
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	6.0	0.9178
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	6.5	0.9211
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	11.2	0.9003

Compare expression of checked genes

Lus10026750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.