Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04600 637 / 0 Nucleotidylyl transferase superfamily protein (.1.2.3) AT1G28350 43 / 0.0003 Nucleotidylyl transferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025538 [exp] 752 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10017122 [exp] 501 / 1e-176 AT3G04600 471 / 9e-166 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10018331 [exp] 113 / 7e-29 AT3G04600 102 / 2e-25 Nucleotidylyl transferase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159300 [exp] 655 / 0 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Lus10026754 pacid=23176567 polypeptide=Lus10026754 locus=Lus10026754.g ID=Lus10026754.BGIv1.0 annot-version=v1.0 ATGTACATTATCTCATTGCTGGAAATTGGGGTTTTTGCTAGTAGACTGATTCTAGTACTTGGTGGGGGGTTTTCAACTGCAGGATTGTTAGCAGACATTG GAATGGAGAAGAGGGAGGGTAAACAAGAGGAGGTAGAGGAAGATCAGGTGGTGAATCCATGGGAGGTTTCGGCCAAAGATGGAGGGAAGATCGATTACGA TAAGCTTATCGACAAATTCGGATGCCAAAGGCTTGAACTTTCAATAGTGGACCGTGTCCAAAGACTAACTGGTAAAGCTCCTCATGTCTTCCTCCGCCGT GGTGTTTTCTTTGCCCACAGAGATTTTGATGAGATACTGGATGCATATGAGAAAGGGAAGAAGTTCTACCTTTATACTGGTAGAGGTCCATCCTCTGAAG CTTTGCATCTCGGTCATCTTGTGCCCTTCATGTTTACAAAATATTTGCAAGATGCCTTCAAGGTGCCACTTGTGATACAACTTACTGATGATGAGAAGTG CATGTGGAAGAATCTTACAGTGGAGGAGAGCCAGAGACTTGCCCGTGAAAATGCGAAAGACATTATTGCTTGCGGTTTTGATGTCACGAGGACATTCATC TTTTCAGATTTTGATTACGTTGGCGGTCTTTGCTCAAGGGTTACTCAAAGAAATGCAAATTGCACTCATTCAAAAATCGTCAATGGTATACAGGTCGTGG GCATATTCGGTTTCAGCGGTGAAGATCACATCGGAAAAGTTAGTTTTCCACCAGTCCAGGCAGCACCATCTTTTCCTAGTTCATTTCCACACTTGTTCTC CGGAAAAGACGACCTCCGTTGCTTGATTCCTTGTGCAATTGATCAGGATCCATACTTCAGAATGACCCGTGATGTTGCACCCAGGCTAGGATATCATAAA CCTTCACTGATCGAGTCATTGTTCTTCCCGGCCCTTCAGGGAGAAACTGGAAAAATGTCTGCCAGTGATCCGAATTCTGCTATATATGTGACTGATTCTG CCAAGGTCATTAAGAACAAGATAAATAAGTATGCGTTCTCTGGGGGGCAAGATTCCGTAGAGAAGCACAGAGAACTTGGGGCAAATCTGGAGGTAGATAT ACCAGTGAAGTACCTAAGCTTCTTCCTGGAGGACGATGCTGAGCTCGAGCACATTAAAACCGAATATGGCGCTGGCCGAATGTTGACCGGGGAGGTGAAG AAGCGTCTTGCTGATGTTTTGACAGAACTGGTAGATCGACATCGTGCAGCTCGAGCTGCCGTGACAGAAGAAATGGTGGATGCTTTCATGGCAGTGAGAC CACTTCCCAATATGTTTGACTGA
AA sequence Show only first row Show all	>Lus10026754 pacid=23176567 polypeptide=Lus10026754 locus=Lus10026754.g ID=Lus10026754.BGIv1.0 annot-version=v1.0 MYIISLLEIGVFASRLILVLGGGFSTAGLLADIGMEKREGKQEEVEEDQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLELSIVDRVQRLTGKAPHVFLRR GVFFAHRDFDEILDAYEKGKKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLTVEESQRLARENAKDIIACGFDVTRTFI FSDFDYVGGLCSRVTQRNANCTHSKIVNGIQVVGIFGFSGEDHIGKVSFPPVQAAPSFPSSFPHLFSGKDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHK PSLIESLFFPALQGETGKMSASDPNSAIYVTDSAKVIKNKINKYAFSGGQDSVEKHRELGANLEVDIPVKYLSFFLEDDAELEHIKTEYGAGRMLTGEVK KRLADVLTELVDRHRAARAAVTEEMVDAFMAVRPLPNMFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	3.0	0.9611
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	3.7	0.9594
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	3.9	0.9577
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	7.2	0.9564
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	10.4	0.9459
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	10.5	0.9360
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	11.2	0.9553
AT1G65900			unknown protein		Lus10007381 [exp]	11.3	0.9445
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	12.0	0.9349
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10031038 [exp]	12.1	0.9073

Compare expression of checked genes

Lus10026754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.