Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27060 869 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G10020 680 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20940 295 / 5e-85 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 188 / 3e-49 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26330 180 / 3e-46 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 172 / 9e-44 ERL1 ERECTA-like 1 (.1.2) AT5G63930 169 / 9e-43 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 167 / 1e-42 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 163 / 1e-41 RKL1 receptor-like kinase 1 (.1) AT2G26730 162 / 2e-41 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025541 [exp] 1809 / 0 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038544 [exp] 332 / 2e-97 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 322 / 9e-95 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012225 [exp] 186 / 2e-49 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 184 / 6e-48 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 182 / 2e-47 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 178 / 5e-46 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10038071 [exp] 177 / 4e-45 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10022678 [exp] 174 / 1e-44 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197500 [exp] 1106 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083000 [exp] 655 / 0 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G082800 [exp] 633 / 0 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G465800 [exp] 632 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G163700 [exp] 333 / 6e-98 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G159101 [exp] 251 / 3e-77 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 193 / 1e-50 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G220100 [exp] 191 / 8e-50 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G126300 [exp] 187 / 1e-48 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 181 / 5e-47 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026756 pacid=23176597 polypeptide=Lus10026756 locus=Lus10026756.g ID=Lus10026756.BGIv1.0 annot-version=v1.0 ATGAAGAAGGTTTGTCTGGTGTTATTGTTGATGGTGGTAACTACTGTACTGGGACAATCAGATCACCAGACATTGTTAGAGCTCCGGAAGGGTATTGTCG ATGATCCATCGGTGAAGCAACTCGAGTCGTGGGATTCGAATTCCTTGGCATCTGATGGATGCCCCAAGGATTGGTATGGAGTTGTTTGTAATGATGGCAA TGTGGCTTCAATTGACCTGAATGGCATGCTTCTTGGTGGCAATTTTAGCTTCCCGGTTATCTCCGGTCTGAAAATGCTGACCAACTTGTCCATTTCGAAC AACCGGTTCGGTGGTACTATCTCGGAAGTTGGTTCCATCCAGTCCCTTGAAATCTTGGATCTTTCCAACAATTTGTTTGAGGGAGTTCTACCTTTTGACA TTGTCAATCTCAAGAATTTGAAAATGCTGAATCTTTCTTCCAATAACTTGCAAGGTATCGTTCCTTCTGGTTTCCGCAATCTCGAGGCTTTGAAGTACTT GGATCTACACAGTAATAACCTCTCTGGGAATGTCATGAATCTGTTCTATGAATTGGGTGACTTGATTCATGTTGACCTCAGCAGCAATCAATTCTTGGGT TCTTTGGATATGGAAATTGGCAGTCCGAATTTTCGGTCATCCGTTCAGTATCTGAATATAAGCCATAACGCGTTGAGTGGCGAACTCTTCACCCATGGAA TTCCGTCTTTTGGAAGTCTAGAGGTTTTTGATGCCACTAATAATCAGTTAGGTGGCGCAATCCCTCCATTCAAACTTATTACTTCTCTTCAGAAGCTTAG GCTTGGAAGCAATCAGTTCTCAGGGACTGTACCTGGAGGTCTTCTGCATCAAAGTCCAATGCTGCTCTCTGAGCTCGATCTCAGCCATAACCAGCTTGAA GGTCCAATAGGAGGTATCAGCTCTACAACCCTGAGGAAGCTTAATATGTCTTCAAATAGCCTATCAGGTATCTTACCAGCAGTCATTGCACATTGTGCCG TCATAGATCTGAGCAATAACATGCTTTCGGGGAACGTGTCAAGGATTCAGAACTGGGGGAATGAAGTGGAGGCGATTCACCTGAGTTCAAACTCATTATC AGGATCTCTCCCCAATCAAACCTCTCAATTCTCCAGGTTGAGTTCACTCAAGATATCAAACAACTCAATAGATGGTGAACTACCATCAGTGTTGGTGACA TTCCCGGCACTAAAAGCAATCGATCTCAGCCTTAATTCTCTCAGCGGGTCGATCCACCCTGATTTTTTGGCTTCACCAACATTGACTGATCTTAATCTAT CAGCCAACAATCTCTCCGTGCCACTGCCTATTCGAGGTCCCCGGGGCTCGAACGAAAATGTAAGCTTGACATCTCTGGATCTGTCGCATAATTCACTAGA TGGAATTATACCTCCGGAGATCAGTAAGCTTAAAAAGTTGGTGTATTTGAACTTTTCTCATAACAGTCTGAAAGGCAGCATCCCGTCCGAAATTCCTGAT GGACTGGAAGGATTTGATGTTTCTTCTAACAACCTGTCTGGTGTTGTGCCTGAAAAATTAAGACGCTTCCCCGAATCATCTTTTCTTCCTGGGAATTCAT TATTGGCAATTTCCATCTCTCCAATGTCACCAAAGAGTCCTTCTCAAGGTGTGATACTTCCAGGCCATCGGTCGCGACTAAAACCGGGCATCAAAGCTGC AATCGTTGCCGGGGTTGTTGGTACTTTTACGATTTTGCTACTTTTGTTCGTCGCTTTCCATTCTAAAACTCAGTGGCAGAATATTAGAATGGGAGCTGCT GCCAAAGGAATTGTCAGAAATGAAGGTGGAGTGCAAAGAAGGTCTTCACTGCTTCCTACCACTAGCAAAAATCTGGATGGATCATCTTCTAGCTTCCATC GTGTTGCTCTTCAACAATCCAAGCTACATGACAATGGTGACACTTCATCAGCTGTAGGGAGGCCAATAGATAACCCTCACCAATTCAGAAATGAAGAAGG ATTAGGTTCTCCCATGTCGGTTTGTTCTTCGCAGCCATCGCCTTCCAAAAGCCAGCTTTCTCCCGAGAGTCCTGGCATGCTCCAGGTCTATTCTCCGGAC AAATTGGCTGGGGATCTGCATCTCTTCGATAGCACCTTGGCGTTCACAGCGGAGGAACTTTCTCGTGCCCCGGCTGAAGTAATTGGCAGGAGTTGCCATG GAACACTGTACAAAGCCACACTTGATTCTGGTGCTGTTCTGGCTGTGAAATGGTTGAAGGAGGGAATATCAAAAGGAAGAAAGGAATTCGGAAGAGAAGT CAAGAAACTCGGGACCATCAGGCATCCAAATTTCATTCCTCTGGTTGGTTACTATTGGGGTCCCAAGGATCATGAAAGGATGATCATATATAGCTATTTT GATGCTCATTGTTTGAGTCTTCATTTCCAGGAGCCAAGAAAGCTCCCACCTTTATCACTAAACGAGAGGCTCCGGGTGGCGATTAGTATCAGTGGATGCT TGAGCTTCATCCACAACCAAAAGGGAATACCACATGGCAACCTGAAATCAACAAACATCTTACTGCAACCTCCACATAACGATCCAATGCTCACTGACTA TTGTCTGCACCGGATGATGACATCAGCCGGGACAGCTGAACAAGTTCTCAATGCTGGTGCTCTCGGGTACAGACCACCTGAGTTTGCCAGCTCGAGTAAG CCCTGCCCATCTTTGAGCAGTGATGTGTATGCATTTGGAGTCATTTTGCTCGAGCTCCTCGTAGGTAAAAGCTCCGCAGATATAGTTCCTTGGGAGCACG GAGTGGTTGATCTGACAGATTGGGTGAGATTGTTAGCTGACGAAAACCGGTCCAGCGATTGCTACGATAAGCAGATGCTAATCAACACCCATAATTCGGA GGAGGCACTCAGAGTTGCCAACCAAATGTTAGCGGTTGGTCTTAGGTGTGTTTCAGCTGCACCAGAAAGGCCTGACATGAAAGCAGTTTTTGAAGATCTT TCAGCCATAGTGTTGTGA
AA sequence Show only first row Show all	>Lus10026756 pacid=23176597 polypeptide=Lus10026756 locus=Lus10026756.g ID=Lus10026756.BGIv1.0 annot-version=v1.0 MKKVCLVLLLMVVTTVLGQSDHQTLLELRKGIVDDPSVKQLESWDSNSLASDGCPKDWYGVVCNDGNVASIDLNGMLLGGNFSFPVISGLKMLTNLSISN NRFGGTISEVGSIQSLEILDLSNNLFEGVLPFDIVNLKNLKMLNLSSNNLQGIVPSGFRNLEALKYLDLHSNNLSGNVMNLFYELGDLIHVDLSSNQFLG SLDMEIGSPNFRSSVQYLNISHNALSGELFTHGIPSFGSLEVFDATNNQLGGAIPPFKLITSLQKLRLGSNQFSGTVPGGLLHQSPMLLSELDLSHNQLE GPIGGISSTTLRKLNMSSNSLSGILPAVIAHCAVIDLSNNMLSGNVSRIQNWGNEVEAIHLSSNSLSGSLPNQTSQFSRLSSLKISNNSIDGELPSVLVT FPALKAIDLSLNSLSGSIHPDFLASPTLTDLNLSANNLSVPLPIRGPRGSNENVSLTSLDLSHNSLDGIIPPEISKLKKLVYLNFSHNSLKGSIPSEIPD GLEGFDVSSNNLSGVVPEKLRRFPESSFLPGNSLLAISISPMSPKSPSQGVILPGHRSRLKPGIKAAIVAGVVGTFTILLLLFVAFHSKTQWQNIRMGAA AKGIVRNEGGVQRRSSLLPTTSKNLDGSSSSFHRVALQQSKLHDNGDTSSAVGRPIDNPHQFRNEEGLGSPMSVCSSQPSPSKSQLSPESPGMLQVYSPD KLAGDLHLFDSTLAFTAEELSRAPAEVIGRSCHGTLYKATLDSGAVLAVKWLKEGISKGRKEFGREVKKLGTIRHPNFIPLVGYYWGPKDHERMIIYSYF DAHCLSLHFQEPRKLPPLSLNERLRVAISISGCLSFIHNQKGIPHGNLKSTNILLQPPHNDPMLTDYCLHRMMTSAGTAEQVLNAGALGYRPPEFASSSK PCPSLSSDVYAFGVILLELLVGKSSADIVPWEHGVVDLTDWVRLLADENRSSDCYDKQMLINTHNSEEALRVANQMLAVGLRCVSAAPERPDMKAVFEDL SAIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	0	1
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	1.0	0.9630
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	2.8	0.8945
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	3.9	0.8837
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	6.7	0.8933
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	6.9	0.8604
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	12.0	0.8756
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	12.2	0.8617
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	12.5	0.8476
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	13.3	0.8693
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	13.4	0.8885

Compare expression of checked genes

Lus10026756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.