Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31690 682 / 0 Copper amine oxidase family protein (.1) AT1G31710 677 / 0 Copper amine oxidase family protein (.1) AT1G31670 647 / 0 Copper amine oxidase family protein (.1) AT4G14940 601 / 0 ATAO1 amine oxidase 1 (.1) AT1G62810 543 / 0 Copper amine oxidase family protein (.1) AT3G43670 538 / 0 Copper amine oxidase family protein (.1) AT4G12290 535 / 0 Copper amine oxidase family protein (.1) AT4G12280 281 / 1e-89 copper amine oxidase family protein (.1) AT4G12270 259 / 8e-79 Copper amine oxidase family protein (.1) AT2G42490 231 / 9e-66 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010540 [exp] 770 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 734 / 0 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10004912 [exp] 663 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 660 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 595 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 533 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 530 / 4e-179 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 514 / 4e-174 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10013355 [exp] 352 / 5e-117 AT1G31710 224 / 2e-68 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 808 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 724 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 697 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 662 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 560 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 535 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 235 / 4e-67 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 229 / 6e-65 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 228 / 9e-65 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10026757 pacid=23176531 polypeptide=Lus10026757 locus=Lus10026757.g ID=Lus10026757.BGIv1.0 annot-version=v1.0 ATGGCTTCCACAAAATCAAACCTTCTCCTCTTCTTCTTCCTCCTCTTCACCACCCTCGCGGCCCACCCGCTCGACCCGCTCAGCCCGGACGAGCTAACCA CAATCCAAACCATCTTGACCACCACCTGCCCACCATCCACACTTCGAAACACAACATTCCACTACATCGGCCTTGACGAGCCCGACAAAAATGAAGTCGT TTCGTGGCTCCGCAACCCCTCGTCCTCTCCCCTGCCTCCTCGCAGAGCCATGGTCATAACCCGGTCCAACCGCCAGACCCACGAAATCGTAATCAACTTA TCGACCCGGACCGTTGAATTGGATCGGGTCTACCACGGGTTCGGGTACCCGGCTCCCACGTTCGAGGAGCAGATGGTTGTCAACCGAATGCCGTTGGACT TCGACCCGTTCAAGGAATCGGTCAGACGGCGAGGGCTCAACTTAACGGACGTTATCTGCTCGTGCTTCCCCGTTGGGTGGTTTGGGGAAGAGGTGAGTAA GAGGGTGACGAAAGTGCAATGCTTTTCCGTTAAAGACTCCGTCAATTTCTACATGCTGCCGTTAGAAGGGATCACGATGGTGGTTGACTTGGATGAGATG AGGATTGTGGAGTACGGCGATAAGAACGGAGCTCCGATGCCGAAAGCTGCCGGGACGGATTATAGGCTGACGGAGAGGGATCCGCCGTTAGGACCCAGGC TTAACGGTGCCGTTTTGCTTCAGCCTGATGGTCCAGGTTTCGCCGTCGATGGACATTCCGTCAGTTGGCTAGATTGGAAGCTGCACGTCTCGTTCGATGC CCGACTCGGTTTGATGATTTCCACAGCTCAAATTTACGACCAAAAACTCAAATCGTACCGGAGTGTCCTCTACAGAGGGTACATGTCCGAGATATTCGGG CCCTACATGGATCCAACGGTCAATCACTACTTTAAGTCGTACCTGGACGTGGGCGAGTACGGGTTCGGTCTATGCACGGTTCCATTGGTCCCGGGCGTTG ACTGCCCGGAAAATGCAGAGTTCATGGACGGGTACATTGCAGGAGGAATCGACGGCTCGCCCGTGAAATGGCCCAACGTCGTCTGCATATTCGAGAGGCA TTCCGGGGATGTCATGTGGCGGCATACTGAACTAGGGATCCCAAACCGTGTGGTAACTGAGACCAGAGCTGATGTGAGCCTTGTGGTGAGATCGGTTGTG ACAGTTGGAAACTACGATCATATAGTAGATTGGGAATTCAAGCCAAGTGGTTCGATTAAAGTTCAGATTGGGTTAAGTGGGATTTTGGAAGTGAAGGCGT CAACGTATACGAACCTAAACAACGATATCGACCCTGACGAAGATGCCTATGGCACGATTGTAGCAGACAACACGATCGGGTTGTACCACGATCATTTCTT CGGGTACTATCTAGACCTTGACGTCGATGGTGTAGCCAATTCTTTTGTCAAGAGGAAAGCCGTGACCAAGAGGGTCACAACCGATATTGATACTCCCAGG AAGAGCTACTGGACGGTGGTCTCTGAAACGGCCAGAATAGAGTCGGAGGCCAAGATCCGGTTAGGTGTTGAGGGAGGACCGTCAGAAATGGTGGTGGTGG ACGCGAAGAAACGGACAAAAAATGGGAACCCGATCGGTTACCGGTTGGTACCGGGCCCATCTATAAGCCCGCTCTTGACTGAAGATGATTACCCTCAGAT TAGAGGCGCGTTTACCAATTACAACATTTGGGTTACTCCGTATAACCGGTCGGAAAGATGGGCGGGTGGTCGGTTTGTCGACCGGAGCAGGGGACAAGAC ACGTTGGCCGTATGGACTGAGAGGAATCGGGAGATCGAAAACAAAGACATAGTCGTGTGGCATGTGATTGGATTCCGCCACATTCCATGCCAAGAAGATT TCCCGGTGATGCCAACTTTAAGTGGTGGATTCGAGCTTCGACCGAACAATTTTTTCGAAGCTAGCCGTGTGCTTAAGGTGGTTCCTCCTCAGCCCGTCAC TCTGGCTAACTGCACCACCACACCCCCTAATGCACTTCCAGTCAGTTAA
AA sequence Show only first row Show all	>Lus10026757 pacid=23176531 polypeptide=Lus10026757 locus=Lus10026757.g ID=Lus10026757.BGIv1.0 annot-version=v1.0 MASTKSNLLLFFFLLFTTLAAHPLDPLSPDELTTIQTILTTTCPPSTLRNTTFHYIGLDEPDKNEVVSWLRNPSSSPLPPRRAMVITRSNRQTHEIVINL STRTVELDRVYHGFGYPAPTFEEQMVVNRMPLDFDPFKESVRRRGLNLTDVICSCFPVGWFGEEVSKRVTKVQCFSVKDSVNFYMLPLEGITMVVDLDEM RIVEYGDKNGAPMPKAAGTDYRLTERDPPLGPRLNGAVLLQPDGPGFAVDGHSVSWLDWKLHVSFDARLGLMISTAQIYDQKLKSYRSVLYRGYMSEIFG PYMDPTVNHYFKSYLDVGEYGFGLCTVPLVPGVDCPENAEFMDGYIAGGIDGSPVKWPNVVCIFERHSGDVMWRHTELGIPNRVVTETRADVSLVVRSVV TVGNYDHIVDWEFKPSGSIKVQIGLSGILEVKASTYTNLNNDIDPDEDAYGTIVADNTIGLYHDHFFGYYLDLDVDGVANSFVKRKAVTKRVTTDIDTPR KSYWTVVSETARIESEAKIRLGVEGGPSEMVVVDAKKRTKNGNPIGYRLVPGPSISPLLTEDDYPQIRGAFTNYNIWVTPYNRSERWAGGRFVDRSRGQD TLAVWTERNREIENKDIVVWHVIGFRHIPCQEDFPVMPTLSGGFELRPNNFFEASRVLKVVPPQPVTLANCTTTPPNALPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	0	1
AT1G45688			unknown protein		Lus10029743 [exp]	1.0	0.9931
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	1.4	0.9795
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	1.7	0.9767
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	2.8	0.9703
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	5.7	0.9511
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	6.3	0.9532
					Lus10011622 [exp]	6.7	0.9554
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	6.9	0.9602
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	7.1	0.9457
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	7.7	0.9494

Compare expression of checked genes

Lus10026757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.