Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 171 / 2e-49 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 85 / 2e-18 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G16390 77 / 1e-15 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79360 72 / 8e-14 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G79410 57 / 5e-09 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 49 / 2e-06 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014801 [exp] 201 / 1e-60 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 166 / 2e-47 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 59 / 9e-10 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 54 / 4e-08 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10033337 [exp] 47 / 1e-05 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 45 / 6e-05 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130533 [exp] 208 / 2e-63 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.012G037400 [exp] 70 / 2e-13 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.015G029400 [exp] 67 / 4e-12 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 59 / 9e-10 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.016G039000 [exp] 54 / 4e-08 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 52 / 3e-07 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.014G000800 [exp] 44 / 8e-05 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10026758 pacid=23176631 polypeptide=Lus10026758 locus=Lus10026758.g ID=Lus10026758.BGIv1.0 annot-version=v1.0 ATGAAGCTACAGAACTACCCTTTTGACTCAAAATTCAGCAACCTTCATCATAGGTTTTCTTCAGCACCATACGTTGGGCCGAAGATGCATGGCGCAGGGA CGTTCGGCCATCTAGCGGACTCAGCCCTAGGAAGAAAAGGCACCCTCATCGTGGTTTGTGCGCTCAACGCCATATTCGGATGCTTAACCGCACTGGCTCC GACCTACTGGACTTACCTCCTCCTATGCCTCCTCACAGGCTTCAGCACTGGAGGGCTCCCTATGTGCACCTTCACCCTGGCCAATGAACCCCGTGGGGCC CAAAAAACGGGGCTCTACGGGTGTTTCCACATTCTACTTCTTCTCATCCAGCATAGCCATGGTCTCGGGAATCGCCTATTTTGTTCAACATTCGTGGCGA GCGCTCTATGTGGCATCATCAATCCCTTCCGTCCTCTTTGTCCTCTTCGTCCTTCCTTTCGTCTCCGAGTCCCACGGTGGTACTTGATTCCCCGTAAACT CAGTCAAGCCATCATGATTATTCAGAAAATAGCTGAGTCAAATGGTAGGCAAGTCCAATGCGGCATCGTTTTAGCCCTCGACGAGCAAGTACACAAGCCT ACCACTCACTCAACAGCCACAACATACAATGAACAAGAAGCAAACGGTTCTTTAATCGACATCGTTCGATGGTCTGTCACACGAACCAGATTGTTCCTAT TGGTTTTCATTAGCTTCTTAGGCTCCATTACATATTACGGTCTTAGCTTGAACGCCGTCAACCTGAGGACCAACCTCTACCTTAACATTGCCGTTAATGC AGTCTCTGAAATGTCCGATTTCACCTTCATTGGGCTCCTTGTAGACCGCATCGGACGGAAGCCTAGCAATTGGTAA
AA sequence Show only first row Show all	>Lus10026758 pacid=23176631 polypeptide=Lus10026758 locus=Lus10026758.g ID=Lus10026758.BGIv1.0 annot-version=v1.0 MKLQNYPFDSKFSNLHHRFSSAPYVGPKMHGAGTFGHLADSALGRKGTLIVVCALNAIFGCLTALAPTYWTYLLLCLLTGFSTGGLPMCTFTLANEPRGA QKTGLYGCFHILLLLIQHSHGLGNRLFCSTFVASALCGIINPFRPLCPLRPSFRLRVPRWYLIPRKLSQAIMIIQKIAESNGRQVQCGIVLALDEQVHKP TTHSTATTYNEQEANGSLIDIVRWSVTRTRLFLLVFISFLGSITYYGLSLNAVNLRTNLYLNIAVNAVSEMSDFTFIGLLVDRIGRKPSNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10026758 [exp]	0	1

Compare expression of checked genes

Lus10026758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.