Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66910 197 / 2e-59 Protein kinase superfamily protein (.1) AT1G66920 196 / 3e-59 Protein kinase superfamily protein (.1.2) AT1G66930 197 / 4e-59 Protein kinase superfamily protein (.1) AT1G66980 195 / 2e-57 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 191 / 3e-57 Protein kinase superfamily protein (.1) AT1G67000 194 / 4e-57 Protein kinase superfamily protein (.1) AT1G70250 192 / 9e-57 receptor serine/threonine kinase, putative (.1) AT5G38280 189 / 4e-56 PR5K PR5-like receptor kinase (.1) AT5G24080 182 / 4e-55 Protein kinase superfamily protein (.1) AT4G18250 186 / 1e-54 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025545 [exp] 341 / 1e-118 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 342 / 1e-115 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 343 / 1e-114 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 335 / 1e-113 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 308 / 6e-104 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10027013 [exp] 290 / 7e-100 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10025492 [exp] 296 / 6e-97 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022367 [exp] 267 / 6e-92 AT1G66930 164 / 5e-48 Protein kinase superfamily protein (.1) Lus10027116 [exp] 258 / 1e-87 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 275 / 7e-93 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 271 / 6e-91 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 277 / 2e-89 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 275 / 6e-89 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009000 [exp] 264 / 2e-88 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 273 / 7e-88 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 273 / 1e-87 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009400 [exp] 270 / 7e-87 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G140800 [exp] 262 / 4e-86 AT5G38280 333 / 1e-107 PR5-like receptor kinase (.1) Potri.017G008600 [exp] 266 / 5e-86 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026759 pacid=23176633 polypeptide=Lus10026759 locus=Lus10026759.g ID=Lus10026759.BGIv1.0 annot-version=v1.0 ATGCCGATCAGGTACTCTTACTCAAACATCCAGAACTTCACTGACGGTTTCAAGGACAAGCTAGGCGAAGGCGGATTTGGTTCTGTTTACAAGGCCAAGC TCCGAAGCGGCAGTTTCGCAGCTGTAAAGATGCTTGGAAACTCCACAGCTGGCGGAGTCCAAGACTTCATCAACGAAGTTGCTACCATTGGAACGATTCA CCATGCTAATGTGGTTAAACTTATTGGCTTTTGTTCTGAAGGATCGAAACGTGCTCTCGTTTACGAGTTCATGCCAAATGGTTCCCTTGACAAGTACATC TTTCACAAGCAACAAGGACGTGCAAAATTGAGCTTGGAACAACTGTATCGCATTTCTATCGGAGTGGCTCAAGGGATTGAATATCTGCACAGCGGGTGTG CCATGCAGATTCTGCATTTCGACATCAAGCCCCATAACGTTCTTCTTGATGACAACTTTAACCCAAAACTATCAGACTTCGGGTTGGCTAGGCTGTATTA TGTAGGCGATAGAGTTGCAACTCTAACTGCAGCAAGGGGAACCATCGAGTACATGGTATCAAAACAGAGAGAAATGGGATGGAAATGGTGTGCGCAAGCT CGCAGCACAGCCATGGACGAGAGCTCTTATTTATATAAACACAGCAACGGTTAA
AA sequence Show only first row Show all	>Lus10026759 pacid=23176633 polypeptide=Lus10026759 locus=Lus10026759.g ID=Lus10026759.BGIv1.0 annot-version=v1.0 MPIRYSYSNIQNFTDGFKDKLGEGGFGSVYKAKLRSGSFAAVKMLGNSTAGGVQDFINEVATIGTIHHANVVKLIGFCSEGSKRALVYEFMPNGSLDKYI FHKQQGRAKLSLEQLYRISIGVAQGIEYLHSGCAMQILHFDIKPHNVLLDDNFNPKLSDFGLARLYYVGDRVATLTAARGTIEYMVSKQREMGWKWCAQA RSTAMDESSYLYKHSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	0	1
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	5.1	0.8722
AT1G11915			unknown protein		Lus10026760 [exp]	7.1	0.8446
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	7.3	0.8608
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	9.5	0.8625
AT3G52070			unknown protein		Lus10039603 [exp]	9.6	0.8570
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	18.0	0.8524
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	18.2	0.8520
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	23.9	0.8248
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	25.0	0.8509
AT3G52070			unknown protein		Lus10029504 [exp]	25.5	0.8390

Compare expression of checked genes

Lus10026759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.