Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11915 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022359 [exp] 357 / 2e-120 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10022368 [exp] 335 / 9e-108 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025546 [exp] 268 / 2e-90 AT2G46495 41 / 5e-04 RING/U-box superfamily protein (.1) Lus10008362 [exp] 265 / 2e-85 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027117 [exp] 252 / 1e-83 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10025544 [exp] 249 / 6e-80 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10027119 [exp] 249 / 3e-79 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025554 [exp] 228 / 8e-72 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 231 / 4e-71 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125000 [exp] 144 / 4e-39 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 136 / 4e-36 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125450 [exp] 118 / 6e-30 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 115 / 5e-29 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 113 / 4e-28 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009500 [exp] 92 / 9e-21 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 91 / 2e-20 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 88 / 1e-19 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 83 / 7e-18 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 83 / 1e-17 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026760 pacid=23176569 polypeptide=Lus10026760 locus=Lus10026760.g ID=Lus10026760.BGIv1.0 annot-version=v1.0 ATGATCTCATCACCATTTATTTTGCTGCCGCTGCAACTACTTCTCCAGAATCGCCAAGCTGCTGCCGATGGTGGGAACTGTGAACCTTCGTCCTGTGGGA ATATCCCCATCATTAAGAACCCTTTTCGACTCGCCACTGATCTCCAGATATGCGGAGATTACAACTACAACTACTACCTGTCATGTGAGAGCAATACAAC AATACTGTATCTGAGGGACTCTTCTGCAAGATTCTATGTGCAAGCAATCAACTACAACAACTTGACAATCCGGGTGGTGGATGATGGTGTGTTTAGAGGC AACTGCTCCTCCTTTCCCGCTACCCCTTTGTCTCTGGGAAGCTTTAATCTCACCGATAGTCCGTATACTACCAGAAGAAAGAGAGGGAATTCTTTGTTAG GAATAAAAATTGAACAACTTGATGAAGTGTTGACTCTGATCAGCTGTGAGAATGCTATGGTCAGTTCTGCAATGTTTATGGAAATAGCTCCTTGCATCGA CCAATCCAGAGATTCTTCACCTTATTATTACTATTATGCGGTTATTGATGGTGACCGTGGTGGCGTGGATTTATTTAGCTTGGGAAAGAAGTGCAAAGTG GAGATGATGACTTTGTTACCAGCGGGTGAGAATTATTCCCATCTCTCATTTCAACAACTTCAACAGCAGTTTAAATATGGGTTTCATCTTTCATGGCACC GTTACAAATGTACTCACTGTTACGGGGTCTGCTCCATTGACAGCCACTACAATGCTCAATGCTATAATGGAATATGGATTCTCGCTTTTTTAGGTAACGG GATACTCTATTATCTTACTTTCTAA
AA sequence Show only first row Show all	>Lus10026760 pacid=23176569 polypeptide=Lus10026760 locus=Lus10026760.g ID=Lus10026760.BGIv1.0 annot-version=v1.0 MISSPFILLPLQLLLQNRQAAADGGNCEPSSCGNIPIIKNPFRLATDLQICGDYNYNYYLSCESNTTILYLRDSSARFYVQAINYNNLTIRVVDDGVFRG NCSSFPATPLSLGSFNLTDSPYTTRRKRGNSLLGIKIEQLDEVLTLISCENAMVSSAMFMEIAPCIDQSRDSSPYYYYYAVIDGDRGGVDLFSLGKKCKV EMMTLLPAGENYSHLSFQQLQQQFKYGFHLSWHRYKCTHCYGVCSIDSHYNAQCYNGIWILAFLGNGILYYLTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11915			unknown protein		Lus10026760 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	2.2	0.8860
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	7.1	0.8446
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	8.0	0.8828
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	14.1	0.8695
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	18.4	0.8492
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	20.8	0.8131
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	21.3	0.8263
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	27.7	0.8150
AT2G01870			unknown protein		Lus10030135 [exp]	29.8	0.8343
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10025202 [exp]	30.2	0.8047

Compare expression of checked genes

Lus10026760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.