Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66930 297 / 9e-93 Protein kinase superfamily protein (.1) AT1G67000 301 / 3e-92 Protein kinase superfamily protein (.1) AT5G39030 294 / 3e-90 Protein kinase superfamily protein (.1) AT1G66920 288 / 8e-90 Protein kinase superfamily protein (.1.2) AT4G18250 290 / 1e-88 receptor serine/threonine kinase, putative (.1) AT5G38280 286 / 1e-88 PR5K PR5-like receptor kinase (.1) AT5G39020 287 / 7e-88 Malectin/receptor-like protein kinase family protein (.1) AT5G38260 283 / 9e-88 Protein kinase superfamily protein (.1) AT1G66910 283 / 2e-87 Protein kinase superfamily protein (.1) AT1G66980 290 / 5e-87 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025547 [exp] 809 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10025553 [exp] 556 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 412 / 3e-138 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 310 / 5e-98 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 297 / 1e-92 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025545 [exp] 278 / 2e-89 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 285 / 4e-89 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 282 / 1e-86 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 231 / 7e-72 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G035500 [exp] 483 / 4e-166 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 466 / 2e-159 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.007G126200 [exp] 464 / 2e-159 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 453 / 4e-156 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 441 / 3e-149 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 437 / 1e-147 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 436 / 1e-147 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 433 / 3e-146 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 429 / 1e-144 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003200 [exp] 322 / 2e-107 AT1G66920 280 / 2e-90 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026761 pacid=23176550 polypeptide=Lus10026761 locus=Lus10026761.g ID=Lus10026761.BGIv1.0 annot-version=v1.0 ATGAGCTTCATATCAAAGGAAACAACATTTTCGATGCACTTGTTCTCCTTCATTTCAGTACTACTAGCAGCAAACCATGGAGCAGCAAGCCATGACAGTT TTTGCAGAAGCAGCTCCAGAAGTTGTGGTGGGACAAACAGCACAAGTGTTTATGATATAAGGTTCCCACTCACAATCAAAGGCAGGCCATCCAGCTACCA TGGATATCCAGGATTCGAGCTTTCTTGCGCAGCTGGAAGTAAACAAACCCTGATCCATCTGACAAATTCTGTGAATTTGACGGTTACAAGTATTGACTAT GAATCTCAGGTGGTTCATGCGAGGAGCCCAAATGACTGCCTACCTGGGAGCCCTGAACCTGAAGCTGAATGCTGGACTGGTTACATCAACCATAATAAAG TGTCATTACTAAAGAAGGGACTGATAGCTGGAGTGGTATTGAGTTCAGTTTTCATAGTGGGACTCCTCATTTCCCTCTACCTTGCATATAAGCATGACCG TAAAGAAAGGGAATACAGCGTAAAAATCGACAAGTTCTTGGATGATTACAAGTCCCTTAAGCCTACAAGATTCACCTATGCTGATATCAAGAGGATAACA AACCAGTTCAGTTGCGAACTGGGTCGAGGAGCTTATGGAACAGTTTTCAAAGGCAAGCTGTCAACTGAAATCCAAGTAGCCGTTAAGGTCCTTAACAGCA GCTCGAAAGGAAACGGAGAAGAGTTTGTGAACGAAGTGGGAACAATGGCTAGAATCCACCACGTCAATGTGGTTAGATTGATTGGTTTCTGTGCAGATGG GTTTAGGAGAGCTCTGGTCTATGAGTACTTACAAAATGACAAATTGCACAAGTACATCTCTTCCTCCTCGTCCAAACTTGACTGGAAGAAGCTCCAAGAC GTTGCTCTTGGAATAGCCAAAGGGATTGAGTATCTTCACCGAGGGTGCGAGAACAGAATCCTGCATTTCGACATCAAGCCTCATAACATCCTCCTAGATC AGAGCTTCAACCCCAAGGTCTCGGATTTCGGGCTGGCCAAGCTGTGTGCCAAGGATCTGAGTGCCATATCTATGACAACAGCTAGGGGGACAATTGGGTA CATTGCGCCAGAAGTTTTCTCGAGGAACTTCGGCAGCGTATCGTACAAGGCTGACGTGTACAGTTTTGGAATGTTGTTGCTGGAGATGGTTGGAGGAAGG AAGAATATCGACGAGACAGCACCAGATGGTGATCACATATACTTCCCAGAGTGGATTTATAACCTATTTGATGAATCTGGGGAAGATGTGAGGGTTGAGA TTGAAGAACAGGAGGAAGAGGAAGAAAAAGAAGAAGACCAGAAGATTGGTAAGAAGCTAGCAGCAGTGGGGCTGTGGTGTATTCAGTGGAAACCAAGTGA CCGGCCTACGATAAAGCTAGTGGTTCAGATGCTGGAAGGAGAAGGTGATAGTTTAACACCACCTCCGAATCCTCTTGCCTCGAGTAATGGTGGTGGCTTA AGGATGACAAGGCTGCAGGCTGGAGGTAGTCGTGTGCCAAGAATGGTTGCAAAGACAGGGATGGAAATCATTCCAGAAACAGAATAA
AA sequence Show only first row Show all	>Lus10026761 pacid=23176550 polypeptide=Lus10026761 locus=Lus10026761.g ID=Lus10026761.BGIv1.0 annot-version=v1.0 MSFISKETTFSMHLFSFISVLLAANHGAASHDSFCRSSSRSCGGTNSTSVYDIRFPLTIKGRPSSYHGYPGFELSCAAGSKQTLIHLTNSVNLTVTSIDY ESQVVHARSPNDCLPGSPEPEAECWTGYINHNKVSLLKKGLIAGVVLSSVFIVGLLISLYLAYKHDRKEREYSVKIDKFLDDYKSLKPTRFTYADIKRIT NQFSCELGRGAYGTVFKGKLSTEIQVAVKVLNSSSKGNGEEFVNEVGTMARIHHVNVVRLIGFCADGFRRALVYEYLQNDKLHKYISSSSSKLDWKKLQD VALGIAKGIEYLHRGCENRILHFDIKPHNILLDQSFNPKVSDFGLAKLCAKDLSAISMTTARGTIGYIAPEVFSRNFGSVSYKADVYSFGMLLLEMVGGR KNIDETAPDGDHIYFPEWIYNLFDESGEDVRVEIEEQEEEEEKEEDQKIGKKLAAVGLWCIQWKPSDRPTIKLVVQMLEGEGDSLTPPPNPLASSNGGGL RMTRLQAGGSRVPRMVAKTGMEIIPETE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	0	1
AT5G14710			unknown protein		Lus10014543 [exp]	3.2	0.7897
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10034122 [exp]	4.2	0.7736
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	4.2	0.7833
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	8.7	0.7634
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	10.7	0.7574
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	11.5	0.7222
AT4G39630			unknown protein		Lus10036631 [exp]	14.0	0.6978
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	16.4	0.7223
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	18.0	0.7339
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	18.1	0.6323

Compare expression of checked genes

Lus10026761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.