Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27090 662 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 276 / 5e-83 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 169 / 1e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 164 / 7e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 162 / 1e-41 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G19090 157 / 6e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 157 / 7e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 155 / 1e-39 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 135 / 6e-33 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 128 / 8e-31 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025550 [exp] 945 / 0 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 298 / 7e-91 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 297 / 2e-90 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 201 / 1e-54 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 196 / 5e-53 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 192 / 1e-52 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 194 / 3e-52 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10015534 [exp] 171 / 6e-45 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 152 / 3e-40 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197700 [exp] 758 / 0 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 746 / 0 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 308 / 3e-94 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 295 / 4e-89 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 206 / 6e-57 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 202 / 2e-55 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 187 / 5e-50 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 177 / 1e-46 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 175 / 7e-46 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 172 / 8e-45 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10026763 pacid=23176559 polypeptide=Lus10026763 locus=Lus10026763.g ID=Lus10026763.BGIv1.0 annot-version=v1.0 ATGGGGGCTAATAACTCCAAGGTAGAGGAAGATAAGGCCTTGCAGCTTTGTCGTGCGAGAAAGAAGTTCGTAAGGCAAGCACTTGACGGTAGATGCTCCC TTGCTGCTACACACGTGGCTTACATTCAGTCCCTTAGAAGCACAGGAGTTGCATTAAGGAAGTTTGTCGAACCTGACCTTCCAACTGAATCATCACTCTA CACTTCCACCAGTGCTACACCAGAGCCGAATTTACGAACCGACAAGGGCTTTTCACACTTCTCGGTTTCGTCTCCATCTGTATCCCATCCTGGGGATGCG GCTGAAAACCTAAACCTTTCTAGGTCACCCACTCCGCCTAGTTCCCGTAGGTTTCAGACCAACCATATGAAGTTCAAAGGCTTGCCTTCTAAAAAGGTTG AAGAAAAGCCTCCGGTTTCGGTTATAGCAACAGTCACTTCTTCCAGTAGTATCCCACAGGATGCAACGCCACCACCTAAGTGTACTGAAGAAAAGCCTGA AGTATCATCCTCCGAACCTTCCTGGGATTACTTTCAGCTTTTCCATCCGATCGATCACGAGTTTACTTCCCAAGATGGAAAGGGAAGTAATAGCCACAGG TTTGGTGTAGGTTCGGAAGGGGAGTTTTTGAACAGAGAGAAGAGTAACTCTCCTTATTTATCACCACTACTAAGAACTCCGACATCATCAGCTGTTGATG TTTCGGCTGAGAGAAAGAAACCATCTTCTGTGAAAGAAGATCAGAATGAGAACAAGGTTGCCCCCAAGGACTTCTTTTCAAGCATGAGGGACATTGAGCA TCTATTTAACAAGGCTTCTGATTCCGGAAGAGAAGTTCCGAGGATGCTAGAAGCAAATAAGCTGCATTTCCGTCCCTTGGCCGCGACGAAAGATAATGGG TCGGCTGCGTCCACTTTACTTAAGGCTTGTTTTTCTTGTGGAGATGATCCTACACATGTACAAGAAGAGCCTGCTCAAGATGAAGTAAAGTACTTAACTT GGCACAGGACAACATCGTCTCGTTCATCATCGTCTAGAAATCTTCTTGGATTGAATTCTAAAGATGACGCAGAGGATCTTGCCGGTAATCTCTTTGACAA TTTCTGCATGAATTCTGGTAGTCATGCTTCGACCTTGGATAGACTACATGCTTGGGAGCGGAAACTTTACGATGAAGTAAAGGCTAGCGAAATCGTGAGG AGGGAATACGATGCCAAATGCAGATTCTTAAGGCAGCTGGAATCGAAAAATGAAGGCTCCTACAGAATAGATAAAACCCGAGCCAGTGTTAAAGATCTGC ATTCGAGAATCAGGATTGCAATCCAAAGAATCGATTCCATATCGAAGAGAATTGAGGAATTGAGGGATAAAGAGCTTCAGCCTCAACTTGAGGAGTTAAT TGAAGGGCTTAGTCGAATGTGGGAAGTGATGTACGAATGCCACAAACTCCAATGCACAATCATCTCCATAGCGAACGGGAACACAAAGATCTCGTTGCCA TCAGAGTCGCGCCGCCAAATCACCCTCCATCTCGAAAACGAGCTCGCCACGCTGTGCACCACTTTCACAAAGTGGACGGGCGCCCAAAAATCGTACCTCA AGTGCATAAATGACTGGCTCTTCAAATGCGTCGTCATCCAGGAGAAGACGTCGAGGAGGAAGAAGAGGGCACCGGACACTGCGTCGATGCTTAGAAACTA TGGCGCACCGATCTACGCCACATGCGGCGTGTGGTTGGACAAGCTCGAGGCCTTACCGGCTAGAGAAGTAGCGGAGTCCATAAAAGGGTTAGCTGCCGAA ACGAGCAGGTTCATACCGCTTCAAGAAAGGAAGAAGCAAGGGAAGAAAGCTGAAACCTTGATGAACTCGTGGAAGGCCGATGAGGATAATGGGAGCGACT CGGGGGTGAACATGTTGAGAGACGACGGGGTTCCTGGCTCGGAAAGGTTCCGGTCGAGTTTGGAAGGGTTCCTCGGACAGCTGAGCAAGTATGCAGAGCT GTCGGTGAAAGCGTATAAAGATGTTGAGAATGCTATCCAAGCTACCAAGCATCAGTTCGAGATGGCCAACTCTCAAACGCAGGGTCAAACGCTTTAA
AA sequence Show only first row Show all	>Lus10026763 pacid=23176559 polypeptide=Lus10026763 locus=Lus10026763.g ID=Lus10026763.BGIv1.0 annot-version=v1.0 MGANNSKVEEDKALQLCRARKKFVRQALDGRCSLAATHVAYIQSLRSTGVALRKFVEPDLPTESSLYTSTSATPEPNLRTDKGFSHFSVSSPSVSHPGDA AENLNLSRSPTPPSSRRFQTNHMKFKGLPSKKVEEKPPVSVIATVTSSSSIPQDATPPPKCTEEKPEVSSSEPSWDYFQLFHPIDHEFTSQDGKGSNSHR FGVGSEGEFLNREKSNSPYLSPLLRTPTSSAVDVSAERKKPSSVKEDQNENKVAPKDFFSSMRDIEHLFNKASDSGREVPRMLEANKLHFRPLAATKDNG SAASTLLKACFSCGDDPTHVQEEPAQDEVKYLTWHRTTSSRSSSSRNLLGLNSKDDAEDLAGNLFDNFCMNSGSHASTLDRLHAWERKLYDEVKASEIVR REYDAKCRFLRQLESKNEGSYRIDKTRASVKDLHSRIRIAIQRIDSISKRIEELRDKELQPQLEELIEGLSRMWEVMYECHKLQCTIISIANGNTKISLP SESRRQITLHLENELATLCTTFTKWTGAQKSYLKCINDWLFKCVVIQEKTSRRKKRAPDTASMLRNYGAPIYATCGVWLDKLEALPAREVAESIKGLAAE TSRFIPLQERKKQGKKAETLMNSWKADEDNGSDSGVNMLRDDGVPGSERFRSSLEGFLGQLSKYAELSVKAYKDVENAIQATKHQFEMANSQTQGQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	0	1
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	2.0	0.8478
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	2.2	0.8339
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	3.5	0.8474
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	3.5	0.8650
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	4.0	0.8227
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	4.9	0.8181
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	5.5	0.8123
AT5G52430			hydroxyproline-rich glycoprote...		Lus10027498 [exp]	6.0	0.8055
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	8.1	0.8140
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	8.5	0.8220

Compare expression of checked genes

Lus10026763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.