Plant FIBer expression Database

Lus10026764 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G21070 360 / 5e-128 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025552
[exp]
280 / 5e-96 AT5G21070 295 / 4e-102 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G158800
[exp]
360 / 1e-127 AT5G21070 382 / 1e-136 unknown protein
Potri.004G196600
[exp]
348 / 4e-123 AT5G21070 393 / 6e-141 unknown protein
PFAM info
Representative CDS sequence
>Lus10026764 pacid=23176556 polypeptide=Lus10026764 locus=Lus10026764.g ID=Lus10026764.BGIv1.0 annot-version=v1.0
ATGGATAGCTTCACAGCCGAAGATCTATCCACGATCGGAGGAATCGCCACCGTTTCGCTTCTCCATTCCTTCATCCCCACTCACTGGCTGCCTTTCTCCA
TTGTCGGTCGCGCTCAGAAATGGACTCTCTCCAGAACTCTCTTCGTCACTGCCTTCGGAGCTGTTCTGCACGTCGTGTCAACTTCACTACTCGGCATAAC
CGCAATCACAATGGCAAACACCATTGCCGGTGAAGAAACAGTCCACAAGCTAGCTTCGCTTCTTCTTGTAGTTCTTGGTGGTGGTTACGTGATACTGTAC
CTCACTGGGAAAGGGGGACACAGTCATTCCCATAACCAACCAATGGAGAAGATGGCTGTTGCAGGGCTTGTTCTCGTTCCTGCGTTATCTCCTTGCGCCA
CTACGCTTCCAGTGTTCCTTGCTGTTGGAAACTCGTCTTCTATGATGGTGCTTGCCATTATTGTACTGCTAATCAGCACGATTACCGTGATGACTTCACT
GGTGGCACTGTCCTTCTACGGCGCAAGTCAGATCAAGTTCCATTGGGTGGAAAGGTACGACAAACTTCTCGTGGGCTCCGTTCTATGTTTGGTAGGAATC
TTGACCCTTATCTTCCACGATCACGACCACCATCACCATGGAGATGGAGCAGGTCTCGACTCTCATCAACTGCCTAGAAAAATCATTCTCCCTTGA
AA sequence
>Lus10026764 pacid=23176556 polypeptide=Lus10026764 locus=Lus10026764.g ID=Lus10026764.BGIv1.0 annot-version=v1.0
MDSFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVVSTSLLGITAITMANTIAGEETVHKLASLLLVVLGGGYVILY
LTGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLISTITVMTSLVALSFYGASQIKFHWVERYDKLLVGSVLCLVGI
LTLIFHDHDHHHHGDGAGLDSHQLPRKIILP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G21070 unknown protein Lus10026764
[exp]
0 1
AT2G25430 epsin N-terminal homology (ENT... Lus10002920
[exp]
3.9 0.9090
AT4G39220 ATRER1A Rer1 family protein (.1) Lus10011502
[exp]
4.0 0.8978
AT5G53750 CBS domain-containing protein ... Lus10029665
[exp]
4.7 0.8887
AT4G29800 PLP8, PLAIVD ,P... PATATIN-like protein 8 (.1.2) Lus10036213
[exp]
6.3 0.8921
AT5G64090 unknown protein Lus10015829
[exp]
6.3 0.8750
AT2G31440 unknown protein Lus10025574
[exp]
7.6 0.8652
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Lus10022552
[exp]
8.1 0.8929
AT2G25110 AtSDF2, ATSDL, ... ATSDF2-LIKE, Arabidopsis thali... Lus10019365
[exp]
9.2 0.8932
AT5G15050 Core-2/I-branching beta-1,6-N-... Lus10032189
[exp]
9.3 0.8945
AT3G15350 Core-2/I-branching beta-1,6-N-... Lus10019477
[exp]
11.6 0.8909

Lus10026764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.