Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27100 734 / 0 C2H2ZnF SE C2H2 zinc-finger protein SERRATE (SE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158600 [exp] 879 / 0 AT2G27100 742 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1) Potri.004G196400 [exp] 845 / 0 AT2G27100 761 / 0.0 C2H2 zinc-finger protein SERRATE (SE) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12066 [flax] [poplar] SERRATE_Ars2_N SERRATE/Ars2, N-terminal domain CL0361 [flax] [poplar] C2H2-zf PF04959 [flax] [poplar] ARS2 Arsenite-resistance protein 2
Representative CDS sequence Show only first row Show all	>Lus10026766 pacid=23176611 polypeptide=Lus10026766 locus=Lus10026766.g ID=Lus10026766.BGIv1.0 annot-version=v1.0 ATGGCCGAAGTCATTAATATGCCGGTCGATTCCGTCGACGGCAACGGTGATCGTGACCCCAACGAGAAGCCCTCCGCTGTCGACGACGACCCCCAATCTT CCCCTCCGCCCCCACCACCTCTTCCTGTACCTCCTCGCCGTCGCGACAGAGACTCCCGCGAGCGCCGAGACGATAGAGACCTCGACCGCCCTCCCAATCG GCGAGGAGGCGATTACTATGACAGGAATCGGTCCCCTCCACCTCCACCACCTAGAGACAGAGAGAGGGATTACAAGAGGAGGATCAGTTTGAGCCCTCCG CCGCTTCCTTATAGGGATAGGAGGCACTCTCCGCCACCTCGTAGGTCCCCTCCGCCGTACAAGAGGTCCAGGAGGGACGATGGCGGTTATGACAATAGGA GAGGCGGTTTCGGACCTGGCGATAGAAGTATCACATCTTTGTTCGTGTCGTGTTGGGTTGGGTATGATGGTGGCGGTGGATATGACCGTGACATGGGTGG GAGGCCTGGCTATAATGATGAACGTCCTAATAATCGGTACATGGGTCGTGGTGGTGTATATCAAGAGTGGGATGCTGGCCGTGGTGAATATGGTGATCCT TCCAATGCTGGGACTACTCAAAGAGAAGGATTAATGTCTTACAAACAATTCATCCAGGAGCTTGAAGATGACATACTTCCCTCTGAAGCTGAACGCAGAT ATCAAGAATACAAGTCAGAGTATATTACGACTCAGAAAAGAGTATTCTTCGAGGCACATAAAGATGAAGAATGGTTAAAAGACAAATATCATCCCACCAA TTTGGTTCCAGCTATAGAAAGGAGGAATGAGTATGCTCGAAAGGTTGCCAAGGAATTTTTGCTTGACCTACAGAGTGGCACAGTGGATTTAGGTCCTGGT GTCAATGCACTGCCCCCAAATAAGGCAGGACAGACCAGCAACCCAAACTCTGAAGATGAAGGTGCCAATGGGGGAAAACGAAAGCGACCTGGCAGGGCAC CTGCCAAACATTCTGATGTTCTCTCATCTGCTCCTAAGGCCCATGCAATTAGTTCGGAACCGAGAAGAATTCAAGCTGACATTGAAAGAGCACAAACACT AGTCTGCAAGCTTGATTCTGAAAAGGGAATTACAGATAATATCTTAGCTGGTTCTGATAGCGATAAAGCAAACAGAGAGAAATCTCATGGAAGCTCTTCT GGTCCTGTTATTATTGTACGAGGGTTAAGCTCTGTTAAGGGCCTGGAGGGCGTTGAACTAATGGACACTCTTCTAACTTATCTTTGGCGGATTCACGGTT TGGACTATTATGGAATGCTCGAGACAAGTGAACCTAAAGGTCTTAGACATGTTAGAGCAGAGGGAAAGACTTCTGATGCCACTACTGGCGGGACTGAGTG GGAAAAGAAGCTTGATTCTCATTGGCAAGAGAGGTTGAAGGGACAAGATCCGTTGGAAATAATGACTGGTAAAGAGAAGATTGATGCGGCAGCTGTTGAA TCGATGGATCCTTATGTGCGAAAGATCAGGGATGAAAAATATGGCTGGAAGTACGGTTGTGGAGCCAAGGGTTGCACAAAGCTGTTTCATGCTGCTGAAT TTGTGCACAAGCATATAAAACTTAAACATCCTGAAGTTGTTTTGGAGGTCACATCCAAAGTGAGGGAGGAGCTTTATTTTCAAAACTACATGAGTGATTC AAATGCGCCTGGTGGTACTCCTGTTATGCAACGACCTATAGTGAAGGACCGGTCAATACACAGTAGGTTAGGTCCTATGAAAGACGTACGTGGCAACAAG AGAGAGCGTGAAAATCATTCGAATGGTAGATCTGAAAATTCACAGCCAGGGGAGTTCCAGTCCAACACCGATGGTGCTGATGGAGGAAATCCTGATGAAC AAATGTATGATAGTGCTGGTGGACAAGGGATGCACGCTCCTTTCTCTTCGGATATGGCTCCTCCTGTCTTGATGCCTGTTCCCGGTGCTGGTCCTCTGGG TCCTTTTGTCCCAGCGCCGCCTGAAGTTGCGATGCGGATGTTCAGGGAGCAAGGTGGTCCTCCTCCTTTTGAAGGTGGTGGTAGAAACCAGAGACCAGGT CCCCAAGTACGTGGGCCGGCACCGATCCTCCTATCTTCCGCATCTCAGCAGGATCCTCGACGAATTCGCAGTTACCAAGACCTGGATGCACCAGACGATG AAGTCACGGTGATAGACTACCGGAGTTTGTAG
AA sequence Show only first row Show all	>Lus10026766 pacid=23176611 polypeptide=Lus10026766 locus=Lus10026766.g ID=Lus10026766.BGIv1.0 annot-version=v1.0 MAEVINMPVDSVDGNGDRDPNEKPSAVDDDPQSSPPPPPPLPVPPRRRDRDSRERRDDRDLDRPPNRRGGDYYDRNRSPPPPPPRDRERDYKRRISLSPP PLPYRDRRHSPPPRRSPPPYKRSRRDDGGYDNRRGGFGPGDRSITSLFVSCWVGYDGGGGYDRDMGGRPGYNDERPNNRYMGRGGVYQEWDAGRGEYGDP SNAGTTQREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRVFFEAHKDEEWLKDKYHPTNLVPAIERRNEYARKVAKEFLLDLQSGTVDLGPG VNALPPNKAGQTSNPNSEDEGANGGKRKRPGRAPAKHSDVLSSAPKAHAISSEPRRIQADIERAQTLVCKLDSEKGITDNILAGSDSDKANREKSHGSSS GPVIIVRGLSSVKGLEGVELMDTLLTYLWRIHGLDYYGMLETSEPKGLRHVRAEGKTSDATTGGTEWEKKLDSHWQERLKGQDPLEIMTGKEKIDAAAVE SMDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHIKLKHPEVVLEVTSKVREELYFQNYMSDSNAPGGTPVMQRPIVKDRSIHSRLGPMKDVRGNK RERENHSNGRSENSQPGEFQSNTDGADGGNPDEQMYDSAGGQGMHAPFSSDMAPPVLMPVPGAGPLGPFVPAPPEVAMRMFREQGGPPPFEGGGRNQRPG PQVRGPAPILLSSASQQDPRRIRSYQDLDAPDDEVTVIDYRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	0	1
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	1.7	0.9116
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	4.9	0.8982
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	8.4	0.8736
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	9.7	0.8835
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	10.5	0.8043
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	12.5	0.8876
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	12.7	0.8744
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	15.1	0.8996
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	15.6	0.8732
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	16.0	0.8617

Compare expression of checked genes

Lus10026766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.