Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21040 643 / 0 FBX2 F-box protein 2 (.1.2) AT1G24530 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 58 / 2e-08 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G51980 56 / 3e-08 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G25440 56 / 5e-08 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G49200 54 / 1e-07 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G49430 55 / 2e-07 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT5G50120 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G27470 54 / 2e-07 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008402 [exp] 993 / 0 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10006511 [exp] 59 / 4e-09 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10001301 [exp] 59 / 8e-09 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10037500 [exp] 58 / 1e-08 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10024128 [exp] 56 / 8e-08 AT4G07410 996 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Lus10018081 [exp] 55 / 1e-07 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 55 / 1e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 54 / 1e-07 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 54 / 1e-07 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157900 [exp] 701 / 0 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.012G134800 [exp] 60 / 2e-09 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G014900 [exp] 59 / 5e-09 AT4G07410 1032 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G077800 [exp] 59 / 7e-09 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G117500 [exp] 59 / 8e-09 AT4G07410 1053 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.015G137200 [exp] 58 / 1e-08 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.010G012800 [exp] 57 / 2e-08 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G148500 [exp] 56 / 3e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 56 / 4e-08 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.002G051900 [exp] 54 / 8e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026770 pacid=23176639 polypeptide=Lus10026770 locus=Lus10026770.g ID=Lus10026770.BGIv1.0 annot-version=v1.0 ATGGAATTTGAATGCCAATCAATCATTGAGGTAGCAAGCAATCAAGCTAGTCTGGATAATTCTGTTCTGGAAATTAGGGATTGTACAATTTCACAGCAAA AGAAGTCAGATTTCTCTTCTCGAAGGGAAACAATAATCAGTGTTTTGGTGAAAGAGTTCCCCGGTGATGGTGATGACGTTCTGCGTAGGTCAATCACTGA CCTTCCTCCGGCATTGATATCTGAGATCCTGAATTGCTTAGACCCTAAGGAACTTGGTGTTGTTTCGTGTGTCTCCACCGTTCTGAACTCGCTAGCAGCT GAGAATCCCGTTTGGAAGGAAGTCTATTGTGAGCGATGGGGGCTTCCTTTACTCCCCTCCCCGGTAGGGATAGAGATTTCAGATGACAAGAAGTGGAAGG AGCTCTTTGTGGAGAGGGAGTTTAGGAGTAGAACATTCTTGGGTCGTTACAGCATTGATGTTTTGTACGGTCATAAGGAAGCTGTTCGGACTGTCTTCCT CTTGGCTTCGGCCAAGCTCATTTTCACTTCCGGGTATGACTCGGTCGTACAGATGTGGGACATGGAAACCAGTCTCGCGATTGCATCGTCCCGGCCCCTC GGATGCACCATTCGAGCTGTTGCAGCCGATGCGAAATTACTAGTTGCCGGTGGCACCGATGGGTTTATTGAAGGTTGGAAGGCCATTGATGGTCTCCCTC ACTTGTTCGACCTCAAGGGTACGGATGAGCCAACTGCTATGTTCAAGCTTTGGGAGCACGGAGGACCTATTACTTCTCTTGCTTTGGATCCGACAAAAAT TTATAGTGGTTCTTGGGACATGGCTGTTCGTTTATGGGATCGAGCTTCACTGGAATGTGTGAAGGTTTTGAGTCATTGTGACTGGGTTTGGAGCCTTGTT CCTCACGGTACTACTGTTGCAAGTACGTCCGGTTCCGATGTGTACATTTGGGATACTCGTAGGGGTACCTTGCTGAATGTTATTACACAGGCTCACACCG GGAATGTCTATGCCTTGGCTCGAAGCCACACTGGGGAGTTTCTTTTCACCGGAGGAGAAGACGGAGAAATACACATGTTCGAGATAAGTATTAACGATTC TTTGAAAATCGCTTCTTGGATTGCTCATTCCGGTCCAGTTTATTCTCTCGCGTTTGAGTTTCCTTGGCTCGTTTCATCCTCCGGCGATGGGAAAATGGCC CTTATGGATGTGAGGAAATTGCTTAGATCAGGTTCTTCGAGGGTGAGAAAGGCGGAGAAAAACATTGTGGAGGCTCCCCAGAGAATGTTGCATGGGTTTG GACCCGATTTGTTCTCTGTGGATATTGGTGCTGACCGTATAGTGTGTGGGGGAGGAGAAGGTGGTGTTAGGATTTGGAACTTCTCGGAAGCATTGGAGAC TGAACAAAGGGTTCGTGCGCTCAGAGGAATAAGGATGGAGAATAGGATGAGACGTCGTAAGCTCCAAACTGAGATGAGGAGCAAGAGTGGCCGGACTGGT CAATGTTCGGTTGCAGCGAACAAGAACTCGATGAATGGTGATCATAACGTGGTCTGGCACAGTAAGCGTGTGGTGAGCGGGAAGCTGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10026770 pacid=23176639 polypeptide=Lus10026770 locus=Lus10026770.g ID=Lus10026770.BGIv1.0 annot-version=v1.0 MEFECQSIIEVASNQASLDNSVLEIRDCTISQQKKSDFSSRRETIISVLVKEFPGDGDDVLRRSITDLPPALISEILNCLDPKELGVVSCVSTVLNSLAA ENPVWKEVYCERWGLPLLPSPVGIEISDDKKWKELFVEREFRSRTFLGRYSIDVLYGHKEAVRTVFLLASAKLIFTSGYDSVVQMWDMETSLAIASSRPL GCTIRAVAADAKLLVAGGTDGFIEGWKAIDGLPHLFDLKGTDEPTAMFKLWEHGGPITSLALDPTKIYSGSWDMAVRLWDRASLECVKVLSHCDWVWSLV PHGTTVASTSGSDVYIWDTRRGTLLNVITQAHTGNVYALARSHTGEFLFTGGEDGEIHMFEISINDSLKIASWIAHSGPVYSLAFEFPWLVSSSGDGKMA LMDVRKLLRSGSSRVRKAEKNIVEAPQRMLHGFGPDLFSVDIGADRIVCGGGEGGVRIWNFSEALETEQRVRALRGIRMENRMRRRKLQTEMRSKSGRTG QCSVAANKNSMNGDHNVVWHSKRVVSGKLKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	0	1
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	5.4	0.8153
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	10.5	0.7582
AT3G51650			unknown protein		Lus10025247 [exp]	16.6	0.7596
AT3G58050			unknown protein		Lus10021073 [exp]	20.6	0.7714
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	20.9	0.7633
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	26.1	0.7426
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	26.5	0.7257
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	26.9	0.7565
AT5G57460			unknown protein		Lus10007798 [exp]	36.1	0.7524
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	40.3	0.7364

Compare expression of checked genes

Lus10026770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.