Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 178 / 8e-52 SGNH hydrolase-type esterase superfamily protein (.1) AT5G37690 118 / 8e-30 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 115 / 7e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 114 / 4e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 108 / 2e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 107 / 5e-26 GLIP7 GDSL-motif lipase 7 (.1) AT2G04570 103 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G53100 101 / 7e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03820 100 / 2e-23 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03810 99 / 6e-23 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008403 [exp] 372 / 2e-128 AT4G10950 141 / 1e-38 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001532 [exp] 176 / 8e-51 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10032399 [exp] 171 / 3e-49 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039877 [exp] 116 / 5e-29 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10022471 [exp] 115 / 1e-28 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 115 / 2e-28 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001540 [exp] 110 / 2e-27 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10016929 [exp] 111 / 4e-27 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10018641 [exp] 110 / 8e-27 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157800 [exp] 264 / 6e-85 AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) Potri.003G141300 [exp] 170 / 1e-48 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 144 / 1e-40 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 117 / 1e-29 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 107 / 6e-26 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.014G160100 [exp] 106 / 1e-25 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 102 / 3e-24 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 102 / 5e-24 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.007G036300 [exp] 102 / 7e-24 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 101 / 8e-24 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026771 pacid=23176586 polypeptide=Lus10026771 locus=Lus10026771.g ID=Lus10026771.BGIv1.0 annot-version=v1.0 ATGGTTAACCAAAGTAGAAAGATCAGCTCTTTGATGCAGCTGCAGCCTGAGCATAGAGATGAAATCGACAGCAACCATCATCTGGGTTCTCGTTCCTCTT CTGGTTCTTTCAGTGACAAGAACTCAAGCTTCTGCCGTATCTGCAATGTTCATAATGGGAGACTCTTCCGTCGATTGCGGAGAGAACACTCTCTTTTACC CTCTCCTCCACAGAAACCTGTCTCTGGTCCCTTGCCAAGGCTCCCAGACCTCCCTCCTCCCTTACCTCCTCGTTATAATTGGTTTGCAGCTAAGAAGATG GGGCTAGCGACACTACCACTGCCGTTCTACAAGCAGAACGGGACAATGGAAGAGGTTCGTAGCGGGTTGAACTACGGGTCAGCTGGGGGGACCATCATGA ACATAGACAGCCTGAGCCACCAGTGTCTAACCCAACAGTTGAGGCAAGTTCTTGAGACGTTCCAGCTGCTTGTGCTGCATTTGGGTCAGGAAACTGCTGA GAGGTTCGTTAACGAATCTGTGTTCTACCTTTCGTTTGGGAAAGACGACTATGTGGACATCTTCCTCGCGGGAAACGCGACGAGGGCGCCTGGTGGCGGT GAGAGGAGCAATGAGTTTGCTCAGGTTTTGGTGCACCAGGTGGTGATGGTGGTGAGGAGGCTGTACGAGGGTGATGTGAGAAGAGTTGTGTGTATGGGGA TACTGCCTGTTGGGTGCGTGCCAAGAATGGTTTGGGACTTGGGTTGGAACCTGAGCTCGATCGACGAGCGGACTGGGTGTGTGAGGGAGGTTAATGAGTT GGTTTTGCAGTATAACAGGTTGTTGGGTGACGGGATTATGGAGCTTCAGAAGGAACTTCCTGGTGCTCAGTTGGTCTTCTGTGACGTTTACCAAGTTGTG ATGGATATCCTGACTAACCCGGCAAATTACGGGTTTGAAGATACCAAAAATGCATGCTGTGGGCTGGGAATCCATGGTGTGATGCTAGGCTGTGTATCAG AAGAGATGGCCTGCAATCTAACTTCATCACCACACGTGTGGTGGGATCTCTACAATCCTACTCAACTAATGAACTCGGTTCTCGCCGATTCAGTTTGGTC CGGTGATACTGATGCTGATGATGATGTCAGTTCTGTTTCTTCCAGCATCTGCCATCCTACTTCAGTAAAGGCATTGGCTTCTTTGTAG
AA sequence Show only first row Show all	>Lus10026771 pacid=23176586 polypeptide=Lus10026771 locus=Lus10026771.g ID=Lus10026771.BGIv1.0 annot-version=v1.0 MVNQSRKISSLMQLQPEHRDEIDSNHHLGSRSSSGSFSDKNSSFCRICNVHNGRLFRRLRREHSLLPSPPQKPVSGPLPRLPDLPPPLPPRYNWFAAKKM GLATLPLPFYKQNGTMEEVRSGLNYGSAGGTIMNIDSLSHQCLTQQLRQVLETFQLLVLHLGQETAERFVNESVFYLSFGKDDYVDIFLAGNATRAPGGG ERSNEFAQVLVHQVVMVVRRLYEGDVRRVVCMGILPVGCVPRMVWDLGWNLSSIDERTGCVREVNELVLQYNRLLGDGIMELQKELPGAQLVFCDVYQVV MDILTNPANYGFEDTKNACCGLGIHGVMLGCVSEEMACNLTSSPHVWWDLYNPTQLMNSVLADSVWSGDTDADDDVSSVSSSICHPTSVKALASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10026771 [exp]	0	1
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	2.4	0.6091
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10002132 [exp]	27.6	0.5669
AT5G06440			unknown protein		Lus10029362 [exp]	31.8	0.5785
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	63.2	0.5534
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	89.9	0.5050
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017663 [exp]	109.0	0.4899
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Lus10015747 [exp]	145.6	0.5055
					Lus10024018 [exp]	224.4	0.4776

Compare expression of checked genes

Lus10026771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.