Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17770 425 / 7e-152 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 221 / 8e-71 FAD/NAD(P)-binding oxidoreductase (.1) AT1G77760 179 / 8e-51 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 178 / 1e-50 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G15140 44 / 6e-05 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008407 [exp] 558 / 0 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 456 / 9e-164 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 443 / 1e-158 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 391 / 5e-138 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 305 / 4e-104 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 217 / 1e-69 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 217 / 6e-69 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10038977 [exp] 179 / 7e-51 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 176 / 6e-50 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157000 [exp] 497 / 2e-180 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.004G194400 [exp] 492 / 3e-178 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 416 / 5e-148 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 411 / 4e-146 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 226 / 7e-73 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.002G088600 [exp] 179 / 9e-51 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 178 / 1e-50 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.015G068500 [exp] 91 / 4e-23 AT5G17770 104 / 1e-28 NADH:cytochrome B5 reductase 1 (.1) Potri.007G072750 [exp] 38 / 0.0004 AT5G17770 39 / 5e-05 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026774 pacid=23176649 polypeptide=Lus10026774 locus=Lus10026774.g ID=Lus10026774.BGIv1.0 annot-version=v1.0 ATGGACGCCTTGCAATCCCGCAGAACCGAAGTGATTAGCATCGCCGTTGCCCTAGTCGCCATCGGCGCCGGCACTGCCTACTATTTCTACCTCACCAGGA AACCCAAACCCGCTAAAGCCTGCCTGGACCCAGAAAACTTCAAGGAGTTCAAACTTATTAAGCGTACAGAGCTCAGCCACAATGTGGCGAAGTTTCGGTT CGAGCTCCCAACTCCTGACTCGGTTCTAGGATTGCCAATTGGACAGCACATGAGTTGCAGAGGAAAAGACAGCGTAGGCGAAGATGTCGTTAAGCCATAT ACTCCGACAACTTTGGACTCTGATGTTGGCTACTTTGATTTAGTGATAAAGATGTATCCACAAGGACGAATGTCTCACCATTTCCGAGAATTGCGTGAAG GTGACTACTTGTTTGTGAAGGGGCCTAAGGGGCGCTTCAAATATCAACCCAACCAAGTGAGAGCATTTGGGATGCTTGCTGGAGGCACCGGCATCACTCC AATGTTCCAAGTTACCAGAGCCATATTGGAGAACCCAAAAGACGAAACCAACGTTAATCTTATCTATGCCAATGTCACATCCGATGACATCCTTTTGAAG GAAGAGCTAGATAATCTCGTCACAAGTTTCCCTGACCGTTTCAAGGTGTACTATGTTCTAAATCAGCCACCGGAAGGATGGAGTGGTGGTGTCGGGTTTG TAACAAAAGAAATGATTGAGGCAAACTGCCCCTCGCCAGCACCTGATGTTCAGATATTGAGGTGCGGGCCACCACCGATGAATAAGGCTATGGCTGGTCA CCTAGAAGCTCTGGGATACACTCCCCAAATGCAGTTCCAGTTTTGA
AA sequence Show only first row Show all	>Lus10026774 pacid=23176649 polypeptide=Lus10026774 locus=Lus10026774.g ID=Lus10026774.BGIv1.0 annot-version=v1.0 MDALQSRRTEVISIAVALVAIGAGTAYYFYLTRKPKPAKACLDPENFKEFKLIKRTELSHNVAKFRFELPTPDSVLGLPIGQHMSCRGKDSVGEDVVKPY TPTTLDSDVGYFDLVIKMYPQGRMSHHFRELREGDYLFVKGPKGRFKYQPNQVRAFGMLAGGTGITPMFQVTRAILENPKDETNVNLIYANVTSDDILLK EELDNLVTSFPDRFKVYYVLNQPPEGWSGGVGFVTKEMIEANCPSPAPDVQILRCGPPPMNKAMAGHLEALGYTPQMQFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	0	1
AT1G11390			Protein kinase superfamily pro...		Lus10018416 [exp]	1.0	0.8995
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	1.4	0.8981
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	2.0	0.8840
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	2.4	0.8845
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	3.2	0.8837
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10040930 [exp]	3.3	0.8642
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	4.2	0.8686
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	4.5	0.8657
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	5.3	0.8603
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	6.2	0.8578

Compare expression of checked genes

Lus10026774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.