Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 394 / 6e-132 FAD-binding Berberine family protein (.1) AT5G44400 387 / 3e-129 FAD-binding Berberine family protein (.1) AT5G44410 385 / 2e-128 FAD-binding Berberine family protein (.1) AT5G44380 385 / 2e-128 FAD-binding Berberine family protein (.1) AT2G34790 383 / 1e-127 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44440 382 / 2e-127 FAD-binding Berberine family protein (.1) AT1G30760 374 / 6e-124 FAD-binding Berberine family protein (.1) AT1G30700 371 / 5e-123 FAD-binding Berberine family protein (.1) AT5G44360 369 / 3e-122 FAD-binding Berberine family protein (.1) AT5G44390 369 / 6e-122 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008410 [exp] 714 / 0 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 688 / 0 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 489 / 3e-169 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 465 / 2e-159 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 459 / 2e-157 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 459 / 3e-157 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 398 / 9e-134 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 393 / 1e-131 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 394 / 3e-131 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 535 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 510 / 2e-177 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 508 / 1e-176 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 504 / 3e-175 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 502 / 2e-174 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 499 / 5e-173 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 497 / 2e-172 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 495 / 2e-171 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 495 / 2e-171 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 495 / 2e-171 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10026775 pacid=23176572 polypeptide=Lus10026775 locus=Lus10026775.g ID=Lus10026775.BGIv1.0 annot-version=v1.0 ATGAGGAGAAGTCTCAACATCTCGCTGCTGCTCATCGTTGTAATTTTCTGTCCTTACCACAACTTAGCTGATGATCAATTAATTCTAGATTGCCTTTATT CGAGCAATCTCTCTCAAGTCACTTACATCCCCACCAACTTAACCTATAGCTCTGTTCTCCAATACTCCATCAAAAATGGCAGGTTCAACACAACCACCTC CTTCAAACCATCCATCATTGTCACTCCAGATTCCATCCCCCAAATCCAAGCCACAATCAACTGCTCCAAAACCCACAATCTTCAGATCAGAATCCGAAGC GGCGGTCACGACTTTGAAGGCCTATCCTACACCTCCTCTCCTCAAGATAATAGCTTCTCCTCCAGCTTCTTGCTCCTAGATCTCATCCGCTTTCGGAACA TTACGATTCATGATCACAACTCGACGGCATGGATTCAGCCTGCGGTGACTACAGGGGAGCTTTACTACAGGCTTCATCAGGTGAGTCCCACTCTAGCTTT TCCTTCTGGGATTTGTCCCACTGTGGGGCTCGGCGGTCATATCAGCGGCGGAGGCTGGGGGTCTCTTCTCCGGAAGTACGGACTCGCGGCGGATAACGTG GTCGACGCTCAATTGATCGACGCGAAAGGGAGGTTTCTCGACAGAGCTTCGATGGGGGAGGATCTGTTCTGGGCTATCCGAGGCGGCGGAGGTAACACAT TCGGGATCGTCGTCGCCTGGAAAGTTAAGTTGGTCACGGTCCCGGTGAACGTGACGGTCTGCAATGTTGTCAAAACTTTGGAGCAGAACGCGACGGAAAT TTTGCATCGGTGGCAGTACGTTGTCGATATGCAGCTCCCTGATGATGTCTTCTCCAGTGTAATTATAACGAGTGGTCAAGCTTCCTTCAATACTCTGTAT TTGGGTGGAACAGAGCACCTGATTCCGATAATGGACAACAAATTTCCAGAACTAGGTTTGAAGGGAGAGAACTGCGTAGAAACGAGCTGGGCGAGATCGA ATCTCTACTTGCTCGGATTCCCACTTGACACCCCACTCGAGACCTTACTCGACAGAACAACTTCGCCGATAGTGTGGGGGAACATAAAAGGGAAGTCGGA CTATGTGAAAGACCCGATTCCGATTAACGGGTTGGAAGGGATTTGGGGGAAGCTAAAGGAGGTGGATGCTAGTACGGCCATGTTGGTAATGGAGTCTTAT GGAGGGAAGATGAAGGAAATTTCTGAATCGAGCATTCCATTCCCGCACAGAAATGGGGTTATCTACCAACTGCAAGAATTAACGTTCTGGGCGGAAGACG GGCAAGTGGCTGCCGATAGGCAAATCAATTGGCTGAGAGGGTTGTATGATTACATGGCTCCTTATGTTTCTAAGAATCCCCGAGAAGCTTATGTCAACTA TAGGGATTTGGATATTGGGACTAATGGCGGCGGTGGTGGCAGCCGCTGGGAAAATTACCTGCTGGCGAGAAGTTGGGGTTTGAAATATTATAAGGGTAAC TTTGATAGATTGGTCGGTGTTAAGACTCTGGTGGATCATGATAATTTTTTCAGGAATGAACAGAGCATTCCGCCTCTCTGA
AA sequence Show only first row Show all	>Lus10026775 pacid=23176572 polypeptide=Lus10026775 locus=Lus10026775.g ID=Lus10026775.BGIv1.0 annot-version=v1.0 MRRSLNISLLLIVVIFCPYHNLADDQLILDCLYSSNLSQVTYIPTNLTYSSVLQYSIKNGRFNTTTSFKPSIIVTPDSIPQIQATINCSKTHNLQIRIRS GGHDFEGLSYTSSPQDNSFSSSFLLLDLIRFRNITIHDHNSTAWIQPAVTTGELYYRLHQVSPTLAFPSGICPTVGLGGHISGGGWGSLLRKYGLAADNV VDAQLIDAKGRFLDRASMGEDLFWAIRGGGGNTFGIVVAWKVKLVTVPVNVTVCNVVKTLEQNATEILHRWQYVVDMQLPDDVFSSVIITSGQASFNTLY LGGTEHLIPIMDNKFPELGLKGENCVETSWARSNLYLLGFPLDTPLETLLDRTTSPIVWGNIKGKSDYVKDPIPINGLEGIWGKLKEVDASTAMLVMESY GGKMKEISESSIPFPHRNGVIYQLQELTFWAEDGQVAADRQINWLRGLYDYMAPYVSKNPREAYVNYRDLDIGTNGGGGGSRWENYLLARSWGLKYYKGN FDRLVGVKTLVDHDNFFRNEQSIPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	1.4	0.9463
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	3.3	0.9613
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	6.5	0.9409
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	10.0	0.9213
					Lus10004308 [exp]	10.2	0.8599
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	11.0	0.9328
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	11.4	0.8516
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	13.3	0.9367
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	13.3	0.9251
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	15.0	0.9356

Compare expression of checked genes

Lus10026775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.