Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71100 344 / 2e-120 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) AT2G01290 332 / 2e-115 RPI2 ribose-5-phosphate isomerase 2 (.1) AT3G04790 293 / 6e-100 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) AT5G44520 80 / 3e-17 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036094 [exp] 498 / 0 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10032450 [exp] 336 / 4e-117 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10042951 [exp] 332 / 1e-115 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10015919 [exp] 294 / 4e-100 AT3G04790 390 / 4e-138 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009180 [exp] 250 / 2e-83 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10008059 [exp] 83 / 3e-18 AT5G44520 290 / 4e-98 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10009181 [exp] 75 / 3e-17 AT3G04790 126 / 1e-37 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10017770 [exp] 63 / 7e-13 AT3G04790 85 / 2e-21 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225700 [exp] 372 / 3e-131 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.008G127600 [exp] 347 / 1e-121 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.010G115300 [exp] 332 / 1e-115 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.005G052000 [exp] 288 / 8e-98 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.013G039400 [exp] 285 / 7e-97 AT3G04790 379 / 2e-133 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.006G039800 [exp] 127 / 1e-33 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Potri.006G039700 [exp] 110 / 1e-27 AT3G04790 122 / 2e-31 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.011G155500 [exp] 104 / 2e-26 AT5G44520 294 / 7e-100 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF06026 [flax] [poplar] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Lus10026777 pacid=23176580 polypeptide=Lus10026777 locus=Lus10026777.g ID=Lus10026777.BGIv1.0 annot-version=v1.0 ATGGCAATTCCTTATCCTCAGTTTAGTCTGGTTCCTTCGGAAAACACACCTGGAGCTGCAATGGAGGCAGAGCTTTCTCAAGACGACTTGAAGAAGATTG CGGCATACAGAGCAGTGGAGTTGGTGCAATCCGGAATGGTGGTCGGGCTCGGAACGGGCTCAACAGCCAAGCATGCAGTCAACAGAATTGGGGAGCTGCT TCGTCAGGGGATTTTAAACGACATCGTTTGCATACCGACTTCTACAAAAACTGAAGAGCAAGCTTTATCTCTAAACATCCCACTATCCAACCTGGATTCC CATCCGGCGGTGGACATCACCATCGACGGCGCCGACGAGGTGGACCCACATCTGAATTTGGTGAAGGGCAGAGGAGGGTCTTTGCTGAGGGAGAAGTTGA TTGAAGGAGCTTCCAACAAGTTTGTGGTGATTGTTGACGACTCCAAGTTGGTGAATTGGATTGGAGGGAGTGGATTGGCTATGCCGGTGGAGGTGGTGCA GTTTTGCTGGAAATTCACAGCCAGGAAGCTGGAGGAGTTTTTCGAATATGCCGGGTGCGTTGCGGAGTTGAGGATGGATGATAAAGAGGATCATCCTTAT GTTACTGATAATGGGAACTACATTGTTGACTTGTATTTGAAGAGGGAACTTGGGGATTTGAAGGTTGCTAGTGATGTAATGATGAGTATGACTGGTGTTG TGGAGCATGGCATGTTTCTTGGCATGGCCACTACTGTCATTGTTGCTGCAAATGGTGGGATTACTTTGAAGGATAAGATTTACTAG
AA sequence Show only first row Show all	>Lus10026777 pacid=23176580 polypeptide=Lus10026777 locus=Lus10026777.g ID=Lus10026777.BGIv1.0 annot-version=v1.0 MAIPYPQFSLVPSENTPGAAMEAELSQDDLKKIAAYRAVELVQSGMVVGLGTGSTAKHAVNRIGELLRQGILNDIVCIPTSTKTEEQALSLNIPLSNLDS HPAVDITIDGADEVDPHLNLVKGRGGSLLREKLIEGASNKFVVIVDDSKLVNWIGGSGLAMPVEVVQFCWKFTARKLEEFFEYAGCVAELRMDDKEDHPY VTDNGNYIVDLYLKRELGDLKVASDVMMSMTGVVEHGMFLGMATTVIVAANGGITLKDKIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	0	1
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	4.6	0.8766
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	6.8	0.8798
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	7.4	0.8719
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	8.4	0.8592
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	10.8	0.8734
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	12.9	0.8773
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	14.9	0.8645
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10034671 [exp]	17.2	0.8058
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	26.4	0.8486
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	27.8	0.8610

Compare expression of checked genes

Lus10026777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.