Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14170 269 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 162 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37320 159 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 160 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 159 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 159 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 156 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77170 147 / 5e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 149 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 147 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036095 [exp] 470 / 2e-167 AT4G14170 308 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 166 / 3e-45 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 165 / 4e-45 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 159 / 2e-43 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034408 [exp] 157 / 2e-43 AT5G42450 538 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 157 / 2e-42 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 155 / 4e-42 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 152 / 4e-41 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018278 [exp] 151 / 8e-41 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369900 [exp] 172 / 1e-48 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G082200 [exp] 164 / 3e-46 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 164 / 2e-45 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 161 / 3e-44 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 157 / 1e-42 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 154 / 2e-41 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 154 / 2e-41 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 153 / 2e-41 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G321700 [exp] 152 / 3e-41 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G146800 [exp] 152 / 7e-41 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026778 pacid=23176571 polypeptide=Lus10026778 locus=Lus10026778.g ID=Lus10026778.BGIv1.0 annot-version=v1.0 ATGGTTCATCGTCATCCCCCAGAACCAGCAGCTGACGCATCTTTGGTGTCCTCTTACTTTCGCCTTCTCCACTCTTCTCCTCACCCAACACATCTTCGTC ACCTCCATGCTCGCTTGCTCCGTACCTTCCTTTATCACAATGTCATTCTCAGCTCCAAACTTGCTTTGATGTACCCCCGCCTCGGCAAACTCAACCCTTA TTCTCTTTTGGCTTTAGTCCATATGCCCAACAGAAACATCTATTCCTGGAACATCCTCATCGGCGAGTTCTCCCGATCGAACACGCCTGAGAAATCCATC GACCTTTTTCTTCGCATGTGGAGGGAAGCCGAGGCACGCCCGGATGATTTCTCCCTCCCTCTTGTTTTAGGGGCCTGCGCTGGATCTGGGTCAGCGGGAT TTTGGGTTTCGTTACATGGGTTATGTGTGAAAATGGGTTTGGTGGCTAACGTCTTCGTTGTCTCAGCTTTGGTGTTTATGTATGTTACGTTAGATAGAAT GTGTAATGCAAGGAAGGTGTTCGATGAAATGTCTGAGAGAGATGCAGTGTTGTGGACTTCTATGTTAGCTGGCTATTCCCAGAAAGGGGAAGCAGTGTTA GGTCTGCGATTGCTGAGGGAGATGGTAGATTCTGATGTTGAGCTTGATGGGGTTGTTATGGTGAGCGTGCTTTCTATGTGCAGCCAATTGGGTTGGTTAA AGCAAGGGAAGACTGTCCACGCTTGGTGCTTGAGAAATGGCTTGGGAGCAATGGAGTTGAGTCTAGGAAACGCTATAGTTGACATGAAGAGCAGGGCGGT TAGAAGAAGCAGAGAGGAAATGCCGGTGGAAGCCGACGAAGCAGTGCTGGGAAGCTGTAGAGTCCACAACAATGTGGAGGTAGGGGGAAGAATCGCCAAA AAACTAATTAAGCTTGAGCCAGAGAAAGGCGGGTATTATGTGCTTCTGTCTAACATGTGTGCAACATCAGGCAGATTCCAGGATGCCCAGTTAGTTAGGG AGTTGATGAAGGATAAGAATGTGGTTAAGGTGCCTGGACTTAGCGTTTCTTGA
AA sequence Show only first row Show all	>Lus10026778 pacid=23176571 polypeptide=Lus10026778 locus=Lus10026778.g ID=Lus10026778.BGIv1.0 annot-version=v1.0 MVHRHPPEPAADASLVSSYFRLLHSSPHPTHLRHLHARLLRTFLYHNVILSSKLALMYPRLGKLNPYSLLALVHMPNRNIYSWNILIGEFSRSNTPEKSI DLFLRMWREAEARPDDFSLPLVLGACAGSGSAGFWVSLHGLCVKMGLVANVFVVSALVFMYVTLDRMCNARKVFDEMSERDAVLWTSMLAGYSQKGEAVL GLRLLREMVDSDVELDGVVMVSVLSMCSQLGWLKQGKTVHAWCLRNGLGAMELSLGNAIVDMKSRAVRRSREEMPVEADEAVLGSCRVHNNVEVGGRIAK KLIKLEPEKGGYYVLLSNMCATSGRFQDAQLVRELMKDKNVVKVPGLSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10026778 [exp]	0	1
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	3.7	0.7873
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	4.9	0.7802
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	9.7	0.7976
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	14.6	0.7811
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	15.8	0.7342
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	18.7	0.7621
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	21.2	0.7445
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	23.6	0.7715
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022992 [exp]	27.5	0.7302
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	31.7	0.7711

Compare expression of checked genes

Lus10026778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.