Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19490 185 / 3e-57 CCAAT Histone superfamily protein (.1) AT3G12480 169 / 8e-51 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT1G54830 60 / 2e-10 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT3G48590 60 / 2e-10 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT1G08970 60 / 3e-10 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT5G63470 60 / 3e-10 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT5G50490 58 / 5e-10 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT1G56170 58 / 8e-10 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G27910 55 / 7e-09 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50480 54 / 1e-08 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008701 [exp] 152 / 3e-44 AT3G12480 194 / 8e-61 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10041638 [exp] 146 / 4e-42 AT3G12480 204 / 9e-65 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026118 [exp] 137 / 3e-38 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10024515 [exp] 61 / 2e-11 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 59 / 9e-11 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10041221 [exp] 59 / 5e-10 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 59 / 6e-10 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 59 / 6e-10 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10016750 [exp] 59 / 6e-10 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225400 [exp] 260 / 5e-86 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.009G022050 [exp] 215 / 2e-68 AT3G12480 118 / 3e-31 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G033200 [exp] 197 / 3e-61 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.003G192100 [exp] 189 / 3e-58 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.009G012300 [exp] 65 / 4e-12 AT1G07980 117 / 7e-33 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) Potri.013G025000 [exp] 61 / 7e-11 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 60 / 3e-10 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 59 / 4e-10 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.005G035800 [exp] 59 / 4e-10 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 59 / 4e-10 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10026780 pacid=23176575 polypeptide=Lus10026780 locus=Lus10026780.g ID=Lus10026780.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAACTCGACACTCGTTTCCCCGCGGCTCGCATCAAGAAGATCATGCAAACTGATGAAGACATTGGCAAGATTGCGATGGCGGTGCCTCTTC TTGTTTCAAAAGCACTGGAGCTATTTCTGCAAGATCTATGTGATCAAACATATGACATTACTCTGAGGAGAGGAGCCAAGACATTGAATTCTTCTCATCT GAAGCAATGTGTGCAAAAGTTTAACGTCTTTGACTTCCTGAGAGAAATTGTTGGCAAGGTTCCTGATTTAGGTGGTTCTGATGCCGTTGCTGATGATCAA CATGGTACCAAAAGGAGGAAAGTTGCTGATGTCGAAGCAGTTAAGAATGACAAGTACTGCGATAGGGAAGTCAGAGTTCATGATATTGGGCCCAGAAGCA GCAGTGGAAGAGGGCGGGGTCGTAGCAGAGGTAGAGGCCGGGGGCGAGGTAGGACTGGTGAGAGGCAGCCATCAACACAGTATGGAAAATATGAAGATGA TCCTGATATGGGACAAGATGATGACCACAAGTATAGTCCCGAGTTGGGAAGACTGCACAATGGCAGGGAGCCTGAAAACTTGAAGGAAAATGTTCCCCCT AGCATGAATCGCTCAACTCCAGTTCATGATTTCGACCTTAATGCGGAGTTGGATGAGAATGGTTACTCGAAGTCAGTTTCACCTGCGGCTGCTCAGACTA TTGAGGTTGGTGCTTTTAGTGCTGCTGGTGAACGAAGTAGTATCTCACAGAAGACAAGCTTATTGAAGAAGGAAGAAGATATCGAATTCCCTGGGTGGTC GCTTGCTCAAGTGCAGAAGATGGATATAGACCCCATGCTGCAGCTTGCAAACTTGAGCAGAATGGATGAGGATGACGAGGACTATGACGAGGAAGATTGA
AA sequence Show only first row Show all	>Lus10026780 pacid=23176575 polypeptide=Lus10026780 locus=Lus10026780.g ID=Lus10026780.BGIv1.0 annot-version=v1.0 MKKKLDTRFPAARIKKIMQTDEDIGKIAMAVPLLVSKALELFLQDLCDQTYDITLRRGAKTLNSSHLKQCVQKFNVFDFLREIVGKVPDLGGSDAVADDQ HGTKRRKVADVEAVKNDKYCDREVRVHDIGPRSSSGRGRGRSRGRGRGRGRTGERQPSTQYGKYEDDPDMGQDDDHKYSPELGRLHNGREPENLKENVPP SMNRSTPVHDFDLNAELDENGYSKSVSPAAAQTIEVGAFSAAGERSSISQKTSLLKKEEDIEFPGWSLAQVQKMDIDPMLQLANLSRMDEDDEDYDEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	0	1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	1.4	0.8768
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	1.4	0.8936
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	3.2	0.8362
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	4.0	0.8551
AT2G26470			unknown protein		Lus10038230 [exp]	5.3	0.8468
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	5.7	0.8352
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	7.2	0.8310
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	7.5	0.8687
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	8.0	0.8416
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	8.1	0.8488

Compare expression of checked genes

Lus10026780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.