Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26920 337 / 1e-106 Ubiquitin-associated/translation elongation factor EF1B protein (.1) AT5G12120 313 / 2e-97 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036096 [exp] 1081 / 0 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10041640 [exp] 191 / 7e-53 AT2G26920 179 / 3e-49 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10024080 [exp] 188 / 6e-52 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G021900 [exp] 680 / 0 AT2G26920 412 / 3e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.001G225200 [exp] 664 / 0 AT2G26920 424 / 1e-140 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.001G033600 [exp] 402 / 1e-131 AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.003G191600 [exp] 347 / 3e-110 AT2G26920 275 / 3e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10026781 pacid=23176652 polypeptide=Lus10026781 locus=Lus10026781.g ID=Lus10026781.BGIv1.0 annot-version=v1.0 ATGTCTCCTGCTTCAAAGTCTAAGTCTAAGGACAAGAAGCCTGGCAAAGAACCACAGAAGGCAGGGCCAAAGTCTCCCGCCCCTGCTAATGGCGTCAGTG GTATTCCAGCCAGTGCATACAATCCACAGTCTGGAACATTCTATACCCTTGAAACTTTGCCAACATCTTCTACCTCTCCCCTACACAGTAACGGCCGTTT CCGCAACATAGATGAGACAGATGACCACTTTGGCGCTTCTCTTGGAGCTGGTGTGGAATATGATTCCGTTTCAAATAATGGAAGCTGGTCGGGTGAGTCA GAAGATCTTAAAGAGAAGACATCCAATCCTCCTCGCCTGGAAGCAATACCTGGCGCTGACAATGACAAGAGAGAAAAAATCCGTCAGAAGAATGAGAGAA AGCACCAGCGCCAGAAGGAAAGGCGAGCACAGGAGTTGCATGAGCGCTGTAGTGGCTATCTCATGTCACGGAAGCTTGAAGCACTTGCCCAACAGCTTGT TGCAATGGGATTTTCGCACGAGCGCTCTACAATGGCTTTAATATTGAATGAAGGTAAAGTGGAAGAGTCTGTGTCATGGCTGTTTGAGGAGGGTGAGGAC GCAGATAAACACCGGGATATAAATCTTGGCGGTGGAAGTTTGAAAATTGACATATCAGATGAGCTTGCTCGGATTGCTGAGTTAGAAGTAAATTACAAAT GTACAAAGCAGGAAGTTGAAAGAGCAGTAGTTGGTTCTGAAGGTGACCTTGACAAAGCTGCAGAAAGTTTAAGGAGAATGAAGCTTGATCCACCGTCTGC ACCTCTGAAGCCTGAAGAAACTGGTGATCCTCCAACTGTGAGTTACGGCAAAGCTTCAGTAGCTGTAAGTCAGAATGTCGTAAAACCCCAAGTAAAACCA AATCAACCGTCTGTATTACAACAGAGACGGGACGATAAGGATTTCAACTATACGAAAGCTCCTGTTCCTTTGGTAGGATCTTCAGAACCTGGGATAAAGA ACTTGCAGCCTTCGAATAGAGTAATTCATCAATCAAAGTTGGAGTGGTCAAAACAGCAAGTCGCTGCTGCTGCTGGTGGGGTATCTGAGAAAAGGTGGAC AGGTGCAGCATCTAATCCATCGGTTTCTTATTCTCTGACATCTACTTTGCAAGTTTCACCTCAACCACCCAAGGCGGAAACCCGGTATGTGTCTGTTGGA GGAGAATATAAAAAGGGTCTTCACCCAGGAAGCACTGTTAGGGAGCCAGTAGTTATGATGCAGCGACCTCAAACTGTAACTACAAAACAACTGCCAGCTG TAACAAGCATGAGCTCATCTTCACCTGGGAGTGCTGCTGTCAGTTGGTATCCAACAAACAGTATCGATATGATGAAGTCGAATGGATTGGTGCACCAGCT TCCTGTGACGAGGAACTTAAGTCCAAGCAACCTGTCTTCGAATCAAATGTTCCAGCAGCAGCAGCAGCACCATCATCACCATCTTCAGTATCAGCCGCAG CAACATTTTATTCCTGGCAGCAGTCCTCTAGAGTCTCCGGGGGCAAGTAGAGGAGGAAATGGTTTATGGAGTAATAATAATAATAGCAATAGTAATAGAA CAGGTACAGCATCATCGACGCTTGCGGCTGCTTCTAATCTTGGACTGTTCTCAGGGTTGGGTTCAACGGTTTCATCAGGGGCATCGTCCCCAGTTGACTG GGGCACTGCAAGCTCAATGGGACAGTTGGACTACACCAACATTGACTGGAGTTTGGATCGTGGGTTGACATCTCCAAGGCCGAATCATAATACATATCTA GGGCAAGGTCCGTTAAAGAATAGCGGCCAGTTCTATGACCCTGTTGTGTCAGGCTTGACGATGATGCGAGCATCTGTTCCGAGTTCCAATGGTATAGCTT TTGCAGGGTTGCAGACAGATGGTGGGGTGGTGGCTAACCAGGATACGTCTGGTGGTGGTGGTGGTTCGCAGGAGTGGACATCGCCATTTGAGGGAAAAGA TCTGTTTAGCATACCCAGACAGTTTGTTTCGTCTCCTTCTCTGTAG
AA sequence Show only first row Show all	>Lus10026781 pacid=23176652 polypeptide=Lus10026781 locus=Lus10026781.g ID=Lus10026781.BGIv1.0 annot-version=v1.0 MSPASKSKSKDKKPGKEPQKAGPKSPAPANGVSGIPASAYNPQSGTFYTLETLPTSSTSPLHSNGRFRNIDETDDHFGASLGAGVEYDSVSNNGSWSGES EDLKEKTSNPPRLEAIPGADNDKREKIRQKNERKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSHERSTMALILNEGKVEESVSWLFEEGED ADKHRDINLGGGSLKIDISDELARIAELEVNYKCTKQEVERAVVGSEGDLDKAAESLRRMKLDPPSAPLKPEETGDPPTVSYGKASVAVSQNVVKPQVKP NQPSVLQQRRDDKDFNYTKAPVPLVGSSEPGIKNLQPSNRVIHQSKLEWSKQQVAAAAGGVSEKRWTGAASNPSVSYSLTSTLQVSPQPPKAETRYVSVG GEYKKGLHPGSTVREPVVMMQRPQTVTTKQLPAVTSMSSSSPGSAAVSWYPTNSIDMMKSNGLVHQLPVTRNLSPSNLSSNQMFQQQQQHHHHHLQYQPQ QHFIPGSSPLESPGASRGGNGLWSNNNNSNSNRTGTASSTLAAASNLGLFSGLGSTVSSGASSPVDWGTASSMGQLDYTNIDWSLDRGLTSPRPNHNTYL GQGPLKNSGQFYDPVVSGLTMMRASVPSSNGIAFAGLQTDGGVVANQDTSGGGGGSQEWTSPFEGKDLFSIPRQFVSSPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	1.7	0.9634
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	2.8	0.9386
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	3.9	0.9315
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	4.2	0.9182
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	6.3	0.9272
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	8.1	0.9088
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	8.9	0.9029
AT1G11320			unknown protein		Lus10013574 [exp]	11.2	0.9308
AT5G10750			Protein of unknown function (D...		Lus10026242 [exp]	11.4	0.9250
AT1G03910			unknown protein		Lus10021530 [exp]	11.7	0.9378

Compare expression of checked genes

Lus10026781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.