Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26930 507 / 2e-180 CMK, CMEK, ISPE, ATCDPMEK, PDE277 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036098 [exp] 690 / 0 AT2G26930 566 / 0.0 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225100 [exp] 557 / 0 AT2G26930 487 / 8e-173 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1) Potri.009G021800 [exp] 542 / 0 AT2G26930 480 / 6e-170 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026783 pacid=23176622 polypeptide=Lus10026783 locus=Lus10026783.g ID=Lus10026783.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCTAGTTTGCTCTGCCCAAACCCAATCTTCAATCCCTCTTCCAATTCCTTCACTAGAAGCAATTTCTCCTCCTTCAAGCCTTCTGGGTCTG TATGTTTCACTCAGAACTTCAAATTCCAGAGGAATTCAGTCGTGAAAGCCAGCAAGAAACAAGTAGAGGTAGTGTATGATCCTGATGAGAGGTTAAACAA GCTAGGTGATGAGGTGGATAGGGAAGCTCCTCTTTCCCGCCTCACCCTTTTCTCTCCTTGCAAGATCAATGTATTCTTGAGAATAACTAGCAAGAGGGAA GATGGGTTCCATGATTTGGCATCTCTTTTTCATGTGATTAGTTTAGGAGATATAATTAAGTTCTCTTTGTCTCCATCAAATAAAACTGATCGTTTATCTA CCAATGTTGCTGGGGTGCCCCTTGATGAAAGGAATTTGATTATAAAAGCCCTTAACCTCTATAGGAAAAAGACAGGCACTGACAAATACTTCTGGATTCA CTTAGATAAAAAGGTACCCACAGGAGCAGGATTGGGTGGTGGGAGCAGCAATGCTGCAACTGCGCTGTGGGCTGCCAATCAGTTCAGTGGTGGTCTTGCT TCTGAGAAGGAACTGCAAGAATGGTCTGGAGAGATTGGGTCAGACATTCCCTTCTTTTTCTCGCATGGAGCTGCCTACTGCACTGGCCGTGGCGAGGTCG TTGAAGATATCCCTTCACCTATTCCTCTGGACATTCCAATGGTTCTTGTAAAGCCCCAACAGGCATGCCCTACTGGGGAAGTCTACAAGCATCTCCGAGT GGACCAAACGAGTCAAGTTGATCCTTTGACATTGCTGGAGAAGATATCAAAGAATGGCATAACACAGGATGCTTGTATAAATGATCTAGAACCTCCAGCA TTTGAAGTGCTCCCTTCCCTTAAAAGGTTGAAGCAACGTATAGCTGCAGCTGGCCGTGGACAGTATGATGCTGTTTTCATGTCTGGGAGTGGTAGCACCA TTGTTGGGGTTGGTTCTCCGGATCCTCCACAGTTTGTGTATGACGATGAAGACTATAAGGATGTTTTCTTGTCAGAAGCAAACTTTGTGACTCGGGAACC TAATGAGTGGTACAAAGAACCGGCTTCCAACACTTCCAGTCTCTCCATACCTGAAGAGGAGTTATCTCAGTCTACAAGTCGCGAATAG
AA sequence Show only first row Show all	>Lus10026783 pacid=23176622 polypeptide=Lus10026783 locus=Lus10026783.g ID=Lus10026783.BGIv1.0 annot-version=v1.0 MAASSLLCPNPIFNPSSNSFTRSNFSSFKPSGSVCFTQNFKFQRNSVVKASKKQVEVVYDPDERLNKLGDEVDREAPLSRLTLFSPCKINVFLRITSKRE DGFHDLASLFHVISLGDIIKFSLSPSNKTDRLSTNVAGVPLDERNLIIKALNLYRKKTGTDKYFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGGLA SEKELQEWSGEIGSDIPFFFSHGAAYCTGRGEVVEDIPSPIPLDIPMVLVKPQQACPTGEVYKHLRVDQTSQVDPLTLLEKISKNGITQDACINDLEPPA FEVLPSLKRLKQRIAAAGRGQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEDYKDVFLSEANFVTREPNEWYKEPASNTSSLSIPEEELSQSTSRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10026783 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	3.5	0.9801
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	4.7	0.9732
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	5.7	0.9790
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	6.9	0.9753
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	7.2	0.9788
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	7.9	0.9791
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	10.6	0.9714
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	11.5	0.9756
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	11.5	0.9726
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	13.1	0.9706

Compare expression of checked genes

Lus10026783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.