Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12110 208 / 5e-68 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) AT2G18110 135 / 3e-39 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 133 / 1e-38 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G19510 130 / 1e-37 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036101 [exp] 294 / 8e-102 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10037618 [exp] 137 / 5e-40 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10013555 [exp] 134 / 1e-38 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10017261 [exp] 131 / 1e-36 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094200 [exp] 173 / 5e-54 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.012G096400 [exp] 136 / 1e-39 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 130 / 2e-37 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 127 / 3e-36 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00736 [flax] [poplar] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Lus10026784 pacid=23176609 polypeptide=Lus10026784 locus=Lus10026784.g ID=Lus10026784.BGIv1.0 annot-version=v1.0 ATGGCCGTCTCATTCTCAGATCTCCACACCGAGGCTGGTCTCAAGGCTCTTGAAGCCTTCCTCTCTGGAAAATCTTACATCTCCGGTGAAAAATTTACTA AAGACGATGTAAAGGTTTATGCTGCTGTTCAAGGCAAACCCAGCGATTCATTCCCTAATGCCAGCAAGTGGTACAGCGCCGTTTCCTCACATCTTGCTTC AAGCTTCCCTGGCAAAGCTGTTGGTGTAGCAGTTGGTGGCGCTGTTGCCTCTACCCCTGCGAAAGAGGCTCCTGCTGCCAGTGTTGGAGACGATGATGAT GACTTGGACCTTTTTGGTGATGAGACTGAAGAGGAGAAGAAGGCTGCAGAGGAGAGGGAGAAAGCTAAGTCTTCCACAAAGAAGAAAGAAAGCGGGAAGT CCTCCATTGTTTTGGATGTGAAGCCTTGGGATGATGAGACAGACATGAAGAAGTTGGAGGAGGCAGTAAGGAGCATTGAGATGGAGGGTCTCCTGTGGGG AGCATCAAAATTGGTTACAGTCGGTTACGGCATCAAGAAGCTCCAGATCATGATGACCATTGTGGATGACCTTGTCTCTGTTGACGATCTTGTTGACGAA TATCTCACTGTTGAGCCACGCAACGAATACATCCAGAGCTGTGACATTGTCGCATTCAACAAAATTTAA
AA sequence Show only first row Show all	>Lus10026784 pacid=23176609 polypeptide=Lus10026784 locus=Lus10026784.g ID=Lus10026784.BGIv1.0 annot-version=v1.0 MAVSFSDLHTEAGLKALEAFLSGKSYISGEKFTKDDVKVYAAVQGKPSDSFPNASKWYSAVSSHLASSFPGKAVGVAVGGAVASTPAKEAPAASVGDDDD DLDLFGDETEEEKKAAEEREKAKSSTKKKESGKSSIVLDVKPWDDETDMKKLEEAVRSIEMEGLLWGASKLVTVGYGIKKLQIMMTIVDDLVSVDDLVDE YLTVEPRNEYIQSCDIVAFNKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	0	1
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10030487 [exp]	1.7	0.9378
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10011776 [exp]	2.4	0.9222
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	4.6	0.9136
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	7.5	0.9198
AT5G59850			Ribosomal protein S8 family pr...		Lus10005960 [exp]	7.7	0.9176
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	8.1	0.9241
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	10.8	0.8499
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	12.7	0.8738
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	13.0	0.8542
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	13.0	0.9182

Compare expression of checked genes

Lus10026784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.