Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03305 790 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180800 [exp] 945 / 0 AT3G03305 867 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.008G077000 [exp] 942 / 0 AT3G03305 907 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10026788 pacid=23176596 polypeptide=Lus10026788 locus=Lus10026788.g ID=Lus10026788.BGIv1.0 annot-version=v1.0 ATGACGTTGGTGCTGGCCTTGTTTGTTGTCGCAGTCGCCTCCGTACTCGTCGTCGGCACCGGTGTGACCGATGAACAGCTGATTACTTTGCAGCCGGAAA AATGGCAGGGCAGAGTTATAGATGTAGAACAAGGAGGAGGCGGAGGAGGTCCCGAGTCGGTGGTATGGGTGGTTCAGCTCTCTGATCTTCACTTTAGTGT TCACAATCCTGAGAGGGCTCTTGATTTCATCTCCATCATCGGCCCTACTCTTAGAATGATCAACCCTTCTCTTGTTCTCATCACTGGTGATCTCACCGAT GGTAAAAGCAAGGACATGCTGACAATGAAACAGGACGAGGTTGAGTGGCATGAATACATGACTGTGATGGAAGAGGTTGTGAAGAAGAGTGGGCTTGACA AGAGCATCTTCTACGATCTTAGAGGCAATCACGATAGTTTCGGTGTGCCTGCTGTTGGTGGATCATTTGATTTCTTTTCAAATTATAGCATCAACGGGCA GCTTAACAGAACAAGAAAGGTCAATAGTGTGACACTTGAGACTTCAAGGTACAAGCTTTTATTTGTTGGGTTGGATACCGCAATGTCAACTGGTTTGCGA GGCCCAACTAATCTGTTTGGTCACCCAACAGATGACTTACTGACTGAAGTGGACTCGCAACTTTCTCAGTGGGATTCTCAATCTGGAAAACCAGTAATCA AGATACCCTTTGGTCATTTTCCACTTTCATTCTCAGCACTCTCGCAGTCTAAAAGAAGCCTCGAAGATATTTTTCTAAAGCATTCTGTGTCGGGTTATTT ATGTGGTCATCTTCATACAAGGTTTGGTAAGAATCTGAAAAGACATCACCAAGTAATTGATAATAGCTGGTCCTTGCGGAAGTTCTTCCAGTTAAATATG CAGCACTTGCCTTCTGAAAGTATGATAAACTGTTCATTTGGAGCCTCACCGCTTAATGAATTCTGGGAATGGGAGATGGGTGACTGGAGAAAGAGCAGAG CAATGCGCATTCTGGCTGTTGATAGAGGTCATGTTTCATATATAGACATGGACTTAAAGGCTGGACATAGGAAAACTATAGTAATGCCCACTTTTCCACT GGACTCTCGGTTCATGTTAACATCTTCATCACGTCGACAATATGTATGTCAACATATGGTTCCGTCCTCTTTTGAGACGGTAAGGGCTCTTGTTTTTTCT CGTTCACCAATATTGTCAGTGGTGGTTAGGATTTATGATTCTAAACCTGGCACTCTTGAAATGGTCATGGAGACAACCATGACAAAGATTTCCGGTGAAT CATCCAGAGCAGACTTCTATGCTGCTCCATGGAATTATAGGGCCTTTGAAGACCCATCGCCTGACAGATTCTGGCTTCAAATTGAAGCAATTGATGTAAT GGAAAGATCAACTGTCACGGAAATTAGACCATTTTCTATAAACGGTGTAACTACTCAGACTTCATGGACATGGAAAGAATTCTATGTTATGGGTTGTCAA TGGGATGCACTGTATTACCCAATTATGTGGTCTATTGTCGTTTTCATCCTGTTGGCTCTTGTTATACCGAATGTTCTCCTCCTTTTCTCAAATAGGCAAT ACAGTTATAAGAATTTTGCTGCTGGTAAAGGGTATGTAAGAGGGCTATCATGGGTTTTACTCGAACTCGGCAAGCTTCCTCTTTTATGGTTTGGCACTTT CACATATGTCATCTATCTTATTGTATGCCCCTGGTTTTCGGGGCAAGTTTTTGCCTACAATGAGAAGAGGGCGTACATGACATACATGGGATGGGTTGTG GAACCCCTTCATCAAAAGGGAAAACATGAGTACAGAGGATCCCCGGATGTGATGGTGATTGTTCTTCCCCATCTGATCTTCGTGGTTATGCCCACGATTT TTGTTGCAGGGGCTTTTGCTGCTGAAAGAAGTATATACAGAGAACATTTTCTTTCCCTTTCTGGAAAAAAAGAAGATGATGATAACAGTCGGAAAATTAG AAGATCGAAATTGTTCAATGGGCAAAGATGGATGCGTAAACTGCTCTTAGTGGTTGCCTTTGCAATATTCTTGAAGCATATTATGCATCCTCAACCTGAA TGTCACTACGAGGACAAGAAGAACCTTAAGGTTTTACACGAAATGCTTCGGAAAGGGACGCCTTGGCCTGGTGAAGCACTCAGACGCTTTTATTCACCTT TGGCAATAAGAGAGGTGTAG
AA sequence Show only first row Show all	>Lus10026788 pacid=23176596 polypeptide=Lus10026788 locus=Lus10026788.g ID=Lus10026788.BGIv1.0 annot-version=v1.0 MTLVLALFVVAVASVLVVGTGVTDEQLITLQPEKWQGRVIDVEQGGGGGGPESVVWVVQLSDLHFSVHNPERALDFISIIGPTLRMINPSLVLITGDLTD GKSKDMLTMKQDEVEWHEYMTVMEEVVKKSGLDKSIFYDLRGNHDSFGVPAVGGSFDFFSNYSINGQLNRTRKVNSVTLETSRYKLLFVGLDTAMSTGLR GPTNLFGHPTDDLLTEVDSQLSQWDSQSGKPVIKIPFGHFPLSFSALSQSKRSLEDIFLKHSVSGYLCGHLHTRFGKNLKRHHQVIDNSWSLRKFFQLNM QHLPSESMINCSFGASPLNEFWEWEMGDWRKSRAMRILAVDRGHVSYIDMDLKAGHRKTIVMPTFPLDSRFMLTSSSRRQYVCQHMVPSSFETVRALVFS RSPILSVVVRIYDSKPGTLEMVMETTMTKISGESSRADFYAAPWNYRAFEDPSPDRFWLQIEAIDVMERSTVTEIRPFSINGVTTQTSWTWKEFYVMGCQ WDALYYPIMWSIVVFILLALVIPNVLLLFSNRQYSYKNFAAGKGYVRGLSWVLLELGKLPLLWFGTFTYVIYLIVCPWFSGQVFAYNEKRAYMTYMGWVV EPLHQKGKHEYRGSPDVMVIVLPHLIFVVMPTIFVAGAFAAERSIYREHFLSLSGKKEDDDNSRKIRRSKLFNGQRWMRKLLLVVAFAIFLKHIMHPQPE CHYEDKKNLKVLHEMLRKGTPWPGEALRRFYSPLAIREV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	0	1
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10015363 [exp]	5.7	0.7608
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	6.9	0.8150
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	7.1	0.8445
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	7.7	0.7948
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	9.3	0.8488
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	9.4	0.8179
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	16.3	0.7470
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	17.4	0.8309
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	20.6	0.8081
AT3G12010			unknown protein		Lus10021085 [exp]	22.7	0.7525

Compare expression of checked genes

Lus10026788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.