Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 87 / 3e-20 F-box and associated interaction domains-containing protein (.1) AT2G05600 41 / 0.0002 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036105 [exp] 299 / 3e-101 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 91 / 5e-22 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 87 / 3e-20 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 69 / 1e-13 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10032458 [exp] 48 / 1e-06 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223000 [exp] 100 / 4e-25 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 96 / 4e-23 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 69 / 9e-14 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 52 / 4e-08 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G215901 [exp] 51 / 9e-08 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 49 / 5e-07 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 49 / 5e-07 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 49 / 6e-07 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 47 / 3e-06 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 46 / 6e-06 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10026789 pacid=23176533 polypeptide=Lus10026789 locus=Lus10026789.g ID=Lus10026789.BGIv1.0 annot-version=v1.0 ATGAATGATCATTACCATTACAAGGAGTTGCCCAAGCTGAATCTGCAGGTAAATTTGGATACAGTTTGCAGGGTGGTTTTTGGTTTTGGATTCCATCCAC GGACAAAAGAGTACAAGGGTGTTAAAGTCGTGTATTACAAACTGTGGACCTATGACTTCTCTGGGGAGAACCCTGAAGCATTCGTGCTGACTATAGGCAA AGACGATGACTGGAGGAAACTTGGGAAAATTTCCTACTCGTTGAATGGTCCAACATCTGAAGCACTAGTAGCTGGCAGGCTTCATTGGAGAAGTTACATT GCTGAAGGAGAAGATGTTAGATCCAAGACGACCATTGTCTCATTCGACTTGGAAAATGAACATTTCCAGCCCATCCCTAGAATTGGTTACCCTTCTTCAA GCCGGATGGATCACAATGTAGTTAACTTAGGAGGTTGTCTTTCTACAGCAGTGTTGAACGGCGATGGAACAACCGAGATTTGGGTGATGAAGTGCTACAA CATGGAGGAATCTGTTTCTTTAAGTTCATGGAAGGGTGCTGTTTCTTTACAGGAGCAAATGCCTGGTTATTTATTATCCAGGTAG
AA sequence Show only first row Show all	>Lus10026789 pacid=23176533 polypeptide=Lus10026789 locus=Lus10026789.g ID=Lus10026789.BGIv1.0 annot-version=v1.0 MNDHYHYKELPKLNLQVNLDTVCRVVFGFGFHPRTKEYKGVKVVYYKLWTYDFSGENPEAFVLTIGKDDDWRKLGKISYSLNGPTSEALVAGRLHWRSYI AEGEDVRSKTTIVSFDLENEHFQPIPRIGYPSSSRMDHNVVNLGGCLSTAVLNGDGTTEIWVMKCYNMEESVSLSSWKGAVSLQEQMPGYLLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10026789 [exp]	0	1
					Lus10012132 [exp]	17.5	0.7871
					Lus10010271 [exp]	24.0	0.7653
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	30.9	0.7501
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	44.0	0.7112
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002600 [exp]	52.5	0.7137
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012494 [exp]	57.4	0.7417
AT2G37890			Mitochondrial substrate carrie...		Lus10036193 [exp]	66.1	0.6920
					Lus10000890 [exp]	71.1	0.6953
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	79.7	0.6980
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	94.8	0.6639

Compare expression of checked genes

Lus10026789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.