Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10270 610 / 0 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 604 / 0 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G71530 346 / 1e-114 Protein kinase superfamily protein (.1.2) AT5G50860 349 / 4e-114 Protein kinase superfamily protein (.1) AT1G53050 347 / 3e-112 Protein kinase superfamily protein (.1) AT5G44290 338 / 4e-109 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 338 / 1e-108 Protein kinase superfamily protein (.1.2) AT1G33770 332 / 3e-107 Protein kinase superfamily protein (.1) AT1G74330 331 / 5e-106 Protein kinase superfamily protein (.1.2) AT5G39420 327 / 7e-105 CDC2CAT CDC2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036106 [exp] 795 / 0 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 712 / 0 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 607 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10039836 [exp] 345 / 3e-112 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 343 / 1e-111 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 342 / 2e-111 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 344 / 9e-111 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 343 / 2e-110 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 342 / 5e-110 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024600 [exp] 696 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G003700 [exp] 654 / 0 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G103300 [exp] 357 / 2e-117 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 355 / 3e-116 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.019G073100 [exp] 352 / 1e-114 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G100100 [exp] 351 / 4e-114 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G032200 [exp] 342 / 3e-111 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 345 / 4e-111 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 340 / 5e-111 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G226900 [exp] 344 / 7e-111 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026790 pacid=23176544 polypeptide=Lus10026790 locus=Lus10026790.g ID=Lus10026790.BGIv1.0 annot-version=v1.0 ATGTCAATTGCGGCCCCTGGTCAACTCCACCTGACCGAGGTACCTCAATGGGGATCCCGAACCATTGACAAGTTCGAGAAGCTGGAACAAATTGGAGAAG GAACTTATGGGCAAGTTTACATGGCTCGTGAAATAGCGACAGGAGAAATCGTTGCTCTGAAGAAAATAAGAATGGACAACGAGAGAGAAGGGTTCCCCCC CCCCGCCATTCGTGAAATCAAAATCCTAATGAAACTCCATCATGACAATGTTATCAAGTTAAAAGAGATAGTAACATCTCCAGATGGTAACAAGTATAGA GGTGGTATCTACATGGTCTTTGAATACATGGATCATGATTTAGCTGGCCTTACTGATCGTCAAGGAATGAGATTCTCAGTTCCTCAAATAAAGTGCTACA TGAAGCAACTGTTAACTGGGCTTCATTATTGTCATGTAAATCAAGTACTTCATCGCGACATCAAAACATCTAATCTTCTCATAGACAATGAGGGGAACCT AAAGCTTGCAGATTTTGGGCTTGCTCGGTCATTTTCGAATGATGAGAACGCAAATCTTACAAATCGTGTTATTACTTTATGGTACAGACCGCCGGAGTTG CTCCTTGGGGCAACGAAGTATGGTCCAGCTGTTGATATGTGGTCGGTTGGCTGTATCTTTGCTGAGCTTCTTCATGGGAAGCCTATTTTCCCTGGCAAAG ATGAGCCCGAACAACTAAACAAGATATTTGAGCTTTGTGGAGCACCTAATGAGGTTACCTGGCCTGGTGTTGCAAAGAATCCTTGGTATAACAACTTGAA GCCTACAAGGCCAATGAAGAAACGACTCAGAGAGGTTTTTAGACATTTTGATCGCCATGCTCTGGATTTGCTGGAGAAGATGATCAATCTTGATCCTGCG CAGAGAATATCTGCCAAAGATGCGCTTGATGCTGAGTATTTCTGGACGGACCCCTTACCATGTGATCCCAAGAGTTTGCCGAAATATGAGGCGTCACACG AGTTCCAGACGAAGAAAAAGAGGCAGCAGCAAAGACAACACGAAGAAGAGAATGCAAAACGTCAGAAGCTACAACACGCGCAGGGACATGGCCGCCTTCC GCCGAATCAGCAAACAGGACGTGCTCATGCACAGATGAGATCGGGGCCTACTAAACCACCGGTGCATGGTTCTCAGCCTCCAGTGGCAGCAGGGCACCTT TACGGAAAGCCCCGTGGATCGTCAGGTGGGCCAGGGAGGTATCCTCCAAGTGGATACAACCACCACCCGAATCAAGGAGGAGGTTATAGAGGTGGGCAGT ATCCTCCTCCTCCGCAAGGTCGAGGGGGCCCACCTTACGGGTCAAGTGGTGCCGGTGGTCCGCGTGGCGGTGGGACTAGTGGGTTTCCGGCACCGAATTA TTCACAAGGACAAGGTGGTCCTTATGCAAGTTCGGGTGGTGGACGTGGTTCAAACAATGTGATGGGTGGGAACAGGAACCAGCAGTACGGGAGTTGGCAG TAG
AA sequence Show only first row Show all	>Lus10026790 pacid=23176544 polypeptide=Lus10026790 locus=Lus10026790.g ID=Lus10026790.BGIv1.0 annot-version=v1.0 MSIAAPGQLHLTEVPQWGSRTIDKFEKLEQIGEGTYGQVYMAREIATGEIVALKKIRMDNEREGFPPPAIREIKILMKLHHDNVIKLKEIVTSPDGNKYR GGIYMVFEYMDHDLAGLTDRQGMRFSVPQIKCYMKQLLTGLHYCHVNQVLHRDIKTSNLLIDNEGNLKLADFGLARSFSNDENANLTNRVITLWYRPPEL LLGATKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPNEVTWPGVAKNPWYNNLKPTRPMKKRLREVFRHFDRHALDLLEKMINLDPA QRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEEENAKRQKLQHAQGHGRLPPNQQTGRAHAQMRSGPTKPPVHGSQPPVAAGHL YGKPRGSSGGPGRYPPSGYNHHPNQGGGYRGGQYPPPPQGRGGPPYGSSGAGGPRGGGTSGFPAPNYSQGQGGPYASSGGGRGSNNVMGGNRNQQYGSWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10026790 [exp]	0	1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	5.5	0.9002
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	8.9	0.9078
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	9.8	0.9049
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	10.3	0.9064
AT2G32970			unknown protein		Lus10035309 [exp]	16.1	0.8933
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	17.3	0.8988
AT5G07630			lipid transporters (.1)		Lus10038931 [exp]	19.9	0.8837
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	21.0	0.8866
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	23.5	0.8474
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	26.8	0.8977

Compare expression of checked genes

Lus10026790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.