Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52620 729 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 279 / 2e-82 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 258 / 6e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 251 / 9e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 245 / 5e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 239 / 3e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 244 / 9e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 241 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 235 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 234 / 4e-66 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036090 [exp] 1509 / 0 AT1G52620 755 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 297 / 3e-89 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 280 / 5e-82 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 261 / 2e-75 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 259 / 4e-75 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 257 / 3e-74 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 259 / 2e-73 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 252 / 4e-72 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 251 / 5e-72 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139200 [exp] 971 / 0 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 305 / 5e-92 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 273 / 3e-78 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 268 / 4e-78 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 264 / 4e-76 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G025600 [exp] 254 / 8e-74 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 252 / 1e-73 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 252 / 2e-73 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G234500 [exp] 254 / 5e-73 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 251 / 2e-72 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026791 pacid=23176641 polypeptide=Lus10026791 locus=Lus10026791.g ID=Lus10026791.BGIv1.0 annot-version=v1.0 ATGTCTAAAACCCTTCTCTCCCGTATCAGACCCCTTAATCACCCAAAACCCATTCGTCCACCTTCTTCATCTTCTTCTTCTCCAGCTCCATTCACGAGCA ACTTCAGAAACCTAGTCTACGATGTTCTGAACATCCTCAGAACTGATCACCAATGGCAAGAATCCCTTGATTCCCTTTTTGTGTCCACCGAAACGGAAGT TTGGGAGATAGCACACTTCGTGTTCGATAAAATTCGCGAACCAGTCCTGGGTTTGAAGTTCTTTGATTGGGCGTCGGAGAAGTCAGATTCTGATAGGTTT CCTTTTAATGGTTTCGCTTGTTCCTCGCTTCTGAAGCTCCTAGCGCGTTCTTGGGTGTTTGAGGAGGTGGAGAATCTGTTGGAGACTATGAAATGTAAAG GTTTGATCCCTACCCGCGATGCATTGAGTGTTTCCATCCAAGCGTATGCCGAAGCAGGGCTGGTTGACAGGGCTCTTCTACTGTACAATGCTGCACCAGG TGTCTATAATCTCTTCCCTGATACTATTGCTTGCAATTCTATATTAAATGCGCTAGTAAAATGTAAGAAATTCGACATTGCACGTAGAATCTACAGTGAC ATGGTGCGGAGAGAAGGTGTTGTGGACAATTATAGCGTAGGTATAATGGTGAGGGGCTTGTGTAAGGAACGAAAGGTTGACGAAGCTAAAAAGTTTATTG AACGAAGATGGGGAAAGCGATGTGTCCCAAATATTGTGTTCTATAACATGATGATTGATGGCTACTGCAGAAACGGCGATACTAAGAGGGCGGTTAAGCT TTTCAGAGAGTTGAAATTAAAGGGGTTTTTGCCTAACTTGGAGACCTATGGAGCATTGATTAATGGGCACTCTAAAGGAGGAGACTTTGGGGAAGTTGAT AAGCTTTTGGTTGAAATAAAACAGAGGGGCTTGAACGTAAATGTTTGGCTGCATAACATTATCACAGATGCTCGAATCAAAAGTAATTGTAAGATTAAAG CTCCGGATACCATCCCTGACATTGTGACGTATAATTCTCTGATCTGCGGTTCATGTCGAGATGGGAAATTGCAAGAAGCCGAGGAATTTCTAAAAGAAGC AGTTAAGAGAGGACTTACGCCAAACAGTATTACGTATACTTCTCTGATACATGCGCACAGCAAGCAAGGGAAATTTGTTAAAGCTTCTGACTTGCTCATT GAGATGACTAAAAATGGTTATATTCCCGATTTGATTGCTTATGGAGCTCTTATTCATGGCCTTGTTTGCTCTGGAGAGGTTGATATTGCTTTGACAGTTA GAGATGAAATGAGAATAAAGGGAACTGTCGCTGATGCAAATGTTTACAATGTTCTGCTAAACGGTCTTTGTAAGAAAGGAAGGCTTCCTGCAGCAAAGAT TCTTCTAGCGGAAATGCTAGACCAAAATATAGCTCCCGATGCCTTTGTTAATGCCACTCTAGTTGACGGGTTTATCAGAAGTGGCAACCTCAGCATGGCT AAAAGAATCTTCGAGCTTACAGCGATCAAGGGAATAGATCCCGGTGTTGTTGGGTATAATGCTATGGTTAAGGGCTTTTGCAAATTTGGATTGATGAATG ATGCAATGTTGTTTTTGAAAAAAATGGTAAGCAATGGCCATGTTCCAGATGAGTTCACATATTCGACTGTGATAGATGGGTATATAAAGCAGAATGACTT GCATGGTGCACTCAGGATGTTTGGACAGATGCTGAAACGGAGGTGTAAGCCAAATGTTGTAACTTATACTTCTATGATTAACGGTTTTTGCCTCAGTGGC GATTCCAGTACAGCTGAAACAATTTTTGTGGAGATGCAATTCTACGGCTTAGTGCCAAATGTGGTTACTTACAGCATACTCATCGGGTGCTTCTCTAAGG AGGGTAAGCTTAGAAAAGCTTGCGTGTATTTTGATCAGATGCTTTTCAATAAGTGTGTTCCGAACGATGTTACGTTCAATTATCTTGTAAATGGCTTTGC TAATAATGTGGAAGCATTGAAGTGTGAGGTACCACTTGATGAAACCCCACTGTGTCTGCAAATTTTTGGATGCATGATATCAGATGGATGGGAGCCGAGA GATGCTGCTTGTACTTCTATCATATTATGTCTCTGCCAATATAGAATGGTTGAAACTGCATTATACTTTAGTGACAGGATGAGGAACAGAGGCTTTGTTC TGAATCCTGTCGCTTTCATTGCCCTGCTACATGGACTTTGCTTGGATAGAAGATCACGAGAATGGATGAATATAATACCTTTTAATCCAAGTGAAAAGGA GCTACGAACTGCTGTCGTGTACTCCCAGAAATTGAACCAATTTCTACCGAGAGGGTTCACGGCAGAGGCTTTGAATATTTTGTACTCCTTGTTGGAAGCT CCATTACTAAATGCGGAAGGTTAA
AA sequence Show only first row Show all	>Lus10026791 pacid=23176641 polypeptide=Lus10026791 locus=Lus10026791.g ID=Lus10026791.BGIv1.0 annot-version=v1.0 MSKTLLSRIRPLNHPKPIRPPSSSSSSPAPFTSNFRNLVYDVLNILRTDHQWQESLDSLFVSTETEVWEIAHFVFDKIREPVLGLKFFDWASEKSDSDRF PFNGFACSSLLKLLARSWVFEEVENLLETMKCKGLIPTRDALSVSIQAYAEAGLVDRALLLYNAAPGVYNLFPDTIACNSILNALVKCKKFDIARRIYSD MVRREGVVDNYSVGIMVRGLCKERKVDEAKKFIERRWGKRCVPNIVFYNMMIDGYCRNGDTKRAVKLFRELKLKGFLPNLETYGALINGHSKGGDFGEVD KLLVEIKQRGLNVNVWLHNIITDARIKSNCKIKAPDTIPDIVTYNSLICGSCRDGKLQEAEEFLKEAVKRGLTPNSITYTSLIHAHSKQGKFVKASDLLI EMTKNGYIPDLIAYGALIHGLVCSGEVDIALTVRDEMRIKGTVADANVYNVLLNGLCKKGRLPAAKILLAEMLDQNIAPDAFVNATLVDGFIRSGNLSMA KRIFELTAIKGIDPGVVGYNAMVKGFCKFGLMNDAMLFLKKMVSNGHVPDEFTYSTVIDGYIKQNDLHGALRMFGQMLKRRCKPNVVTYTSMINGFCLSG DSSTAETIFVEMQFYGLVPNVVTYSILIGCFSKEGKLRKACVYFDQMLFNKCVPNDVTFNYLVNGFANNVEALKCEVPLDETPLCLQIFGCMISDGWEPR DAACTSIILCLCQYRMVETALYFSDRMRNRGFVLNPVAFIALLHGLCLDRRSREWMNIIPFNPSEKELRTAVVYSQKLNQFLPRGFTAEALNILYSLLEA PLLNAEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	0	1
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	4.9	0.7182
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	7.9	0.6976
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	8.9	0.7439
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10031573 [exp]	10.2	0.7222
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	14.3	0.6909
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	17.4	0.6992
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	19.7	0.7266
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	22.8	0.7069
AT1G55170			unknown protein		Lus10041450 [exp]	24.7	0.6944
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10018842 [exp]	27.3	0.6728

Compare expression of checked genes

Lus10026791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.