Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52630 658 / 0 O-fucosyltransferase family protein (.1.2) AT3G02250 227 / 7e-69 O-fucosyltransferase family protein (.1) AT5G15740 213 / 1e-63 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 206 / 3e-61 O-fucosyltransferase family protein (.1) AT5G35570 206 / 6e-60 O-fucosyltransferase family protein (.1) AT2G03280 197 / 5e-58 O-fucosyltransferase family protein (.1.2) AT1G22460 194 / 8e-56 O-fucosyltransferase family protein (.1) AT3G26370 192 / 2e-55 O-fucosyltransferase family protein (.1) AT5G01100 193 / 4e-55 O-fucosyltransferase family protein (.1) AT3G54100 192 / 6e-55 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036089 [exp] 767 / 0 AT1G52630 677 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10026624 [exp] 216 / 9e-65 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 216 / 1e-64 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 215 / 2e-64 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 213 / 1e-63 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 210 / 2e-62 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 209 / 5e-62 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 208 / 1e-61 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10036833 [exp] 207 / 5e-61 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062600 [exp] 666 / 0 AT1G52630 667 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.001G171500 [exp] 310 / 3e-105 AT1G52630 302 / 1e-103 O-fucosyltransferase family protein (.1.2) Potri.017G101300 [exp] 227 / 8e-69 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 217 / 4e-65 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 213 / 2e-63 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 206 / 3e-61 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 205 / 2e-60 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 204 / 4e-60 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 202 / 1e-59 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 200 / 1e-57 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026792 pacid=23176608 polypeptide=Lus10026792 locus=Lus10026792.g ID=Lus10026792.BGIv1.0 annot-version=v1.0 ATGATTGCCGTCTCTGTGAAACCATTGTTCATTACCCTCTTCACTCTCTCCCTCCTCGCCGCCATCATTTTGCTTTCGCCTACACTCCCCGTAAATCCCA TTTCCCCCGGTTTCCCAACGGGTTGGCTATATGGAATGTTAAAAAGAATTGTGGAATGGAGGCCGTGTAAGTGGTGGCTTCAGGGTCATCTTAATGCTCC ACCGACAGGTACTAATGGATATATTCGTGTGGATTGCTATGGTGGCCTCAATCAGATGAGAAGAGATTTCTGTGATGGAGTTGGTATTGCCCGCTTGTTG AATGCAACTCTCGTTTTGCCAACGTTTGAGGCAGCTTCATATTGGAATGAGTCGAGTGGTTTTGCAGATGTATTTGATGTGGATTACTTCATTCAACAAG TGACTAATTTCGTTCGAGTCGTCAAAGAACTGCCACCAGAAATAGCAACTAAAGAGCCGTTTCATGTTGATTGTAGCAAACGCAAAGGACAATTCGATTA TGTCGAGAATGTCCTCCCACCGTTGTTGGAGCATCGCTTTATTTCAATTACACCAGCAATGAGTCAAAGGAGGGACAGGTATCCTCTGTATGCAAAAGCT GCACTCTGTCAAGCATGTTATAGGGCATTACGTCTGACAAGTTCACTGGAGGAGAAAGCTATGGAACTCTTGGAAGCTATACCAAAACCATTCCTCTCAC TACATCTGCGCTTTGAACCTGACATGGTAGCATACAGCCAATGTGAGTACGAAGACCTCTCTTCATCTTCCATGGAAGCCATCGAAGCTGTTCGGGGAGA TAGAAAACCCTGGACTGGAGAAATGGCTAGTATTTGGAGAAAACGAGGGAAGTGTCCCCTTACTCCTAGCGAGACAGCTTTAATCCTGCAAGCACTTTCC ATCCCTACCAACACAAATATATATCTCGCGGCTGGGGATGGTATTATGAAACTGGAAGGGCTAACATCTGTATATACCAACATATACACAAAATCTGCAC TTCTTAACAGCCAGGATTTTACTAACATGCATGGGAACACGAAAGCTGCGCTGGATTACTACATTTCGATTACTAGTGATTCATATGTAGCGACGTATTT TGGGAACATGGATAAGATGGTTGCTGCAATGAGGGCATACAAAGGCCTGTACAAGACGTTGTTCTTGAGCCGGAAAGCTTTTGCTGAACTGACATTGAAG GGACTGAAAGGGATAGAGTTGATGGAAGGGTTATGGTCAGCTCATAAAGAAGATTTTGTTATGGGAAGAGGATCTGTTTTGCCCGACTGCTTTTGCGAAT CTAAATTGTGA
AA sequence Show only first row Show all	>Lus10026792 pacid=23176608 polypeptide=Lus10026792 locus=Lus10026792.g ID=Lus10026792.BGIv1.0 annot-version=v1.0 MIAVSVKPLFITLFTLSLLAAIILLSPTLPVNPISPGFPTGWLYGMLKRIVEWRPCKWWLQGHLNAPPTGTNGYIRVDCYGGLNQMRRDFCDGVGIARLL NATLVLPTFEAASYWNESSGFADVFDVDYFIQQVTNFVRVVKELPPEIATKEPFHVDCSKRKGQFDYVENVLPPLLEHRFISITPAMSQRRDRYPLYAKA ALCQACYRALRLTSSLEEKAMELLEAIPKPFLSLHLRFEPDMVAYSQCEYEDLSSSSMEAIEAVRGDRKPWTGEMASIWRKRGKCPLTPSETALILQALS IPTNTNIYLAAGDGIMKLEGLTSVYTNIYTKSALLNSQDFTNMHGNTKAALDYYISITSDSYVATYFGNMDKMVAAMRAYKGLYKTLFLSRKAFAELTLK GLKGIELMEGLWSAHKEDFVMGRGSVLPDCFCESKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	0	1
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	5.1	0.7999
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	6.2	0.8029
AT2G47020			Peptide chain release factor 1...		Lus10038039 [exp]	7.3	0.7353
AT5G41980			unknown protein		Lus10024452 [exp]	7.7	0.7882
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	8.7	0.7965
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	11.2	0.7864
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	19.3	0.7735
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	24.6	0.7835
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	24.7	0.7889
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	24.9	0.7619

Compare expression of checked genes

Lus10026792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.