Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 376 / 4e-126 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 372 / 2e-124 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21790 369 / 5e-123 UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 365 / 6e-122 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT4G15280 353 / 4e-117 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 348 / 3e-115 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15260 320 / 8e-106 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 314 / 6e-102 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT1G07260 303 / 5e-98 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT1G07240 302 / 3e-97 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 381 / 4e-128 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 379 / 7e-127 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 372 / 6e-125 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036088 [exp] 367 / 5e-122 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 319 / 1e-103 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 298 / 2e-95 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 283 / 7e-90 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 246 / 8e-76 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027334 [exp] 236 / 5e-75 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G007000 [exp] 460 / 7e-159 AT3G21760 449 / 5e-155 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 450 / 5e-155 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G016500 [exp] 432 / 3e-148 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017400 [exp] 429 / 7e-147 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017100 [exp] 427 / 3e-146 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017232 [exp] 423 / 2e-144 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017300 [exp] 422 / 5e-144 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.006G007600 [exp] 397 / 2e-134 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007200 [exp] 384 / 4e-129 AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 384 / 5e-129 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10026793 pacid=23176606 polypeptide=Lus10026793 locus=Lus10026793.g ID=Lus10026793.BGIv1.0 annot-version=v1.0 ATGGCTCACACCGATTCCAACCTTGGGACCTTAAAGCACACCACCAAGAGAGCGGAGCTGGTGTTCATACCATCGCCGGGCGTGGGCCACATTACGGCGC TGGCACAATTGGCCCAACTGTTGGTCGCAAGGGACGACAACCTGTGGATCACAATCCTAATCATGCACCTTCCCCATGGTGATGCCAACTACACTAACCA TACAACGGCACTCGCCTCTACCTCCTCCGCCCTCTCCGACCGGGTCAAGTTCGTCGACCTCCCACCCAACGACGCCGCCGTCGATCCTGCCGCCAAGGAT GTCGTCAGCTTCTTTATGTACTCCTACAAATCCCACATCAGGGACGCCGTCTCCAAGCTCGTCGACCAATCCCCTTTCCTGTCAGGATTCCTAGTCGACA TGTTCTGCACCACATTCATCGACGTCGCTGTTGAATTCGGCCTCCCCAGCTACGTCTTCTACACCTCCGGCGCCGGCTGCCTCAACCTCACCCTCTATTT CCAGAATCTAAGAGATGCGCAAAACGTCCCGGTCTCTGATTTCAACAACCCCGTCGCCGATTGGAAAATCGAGGGTTTCGCAAACTCAATCCCGGGGAAA GTCCTGCCTCGCCCTGTTTTGAATCCGTATCAGTGCGACGGATTCCTCAATTTCGTCCAAAATTACAGAAACGCCAAAGGAATCGTAATTAACACTTTCC CTGAGCTGGAGTCGGCAACCATCGAACACCTATCCAAGGGGGGAAACCCTCCGGTTTACCCAGTCGGACCAATTTTGGAGTTGAAGCGAGGCGGAGGAGA TGTTAAAGACAAGGGAAGAAGCAGCGATATCATGAACTGGCTCAACGAACAGCCTCCTTCTTCCGTTGTCTTCCTCTGCTTCGGGAGCAACGGCTGCTTC AACGAGAAACAGGTGAAGCAAATAGCGGAGGCCCTGGAAAGAGCCGGGTACAGATTCCTCTGGTCCCTCCGCCGGCCTCCACCCAAGGGCACCGTCTCAT TCCCATTAGATTATGAGAATCCGTCGGATGTTCTTCCAGAAGGATTCCTGGAGAGGACTACCGGATTGGGGAAAATCATTGGGTGGGCCCCACAAGCTGC GATACTGGCGCACTCGGCGGTGGGCGGGTTCGTGTCGCACTGCGGGTGGAATTCGATACTAGAGAGCCTGTGGTTCGGGGTGCCGATCGCGACGTGGCCG ATCGACGGGGAGCAACAGCTGAACGCGTTTGAGATGGTGAAAGAGTGGGGGTTGGGTGTGGACATTAAGATGGAGTACAGCAAGGAGTTTGGAGTGGATG AGGATGATGTGATAACAGTGAGCAGCGATGAGATTGAGAAAGGGTTGAAGGGATTGATGGAAGATCAAGGGGGCGAGGTTAGGGAGAGAGTTAGGAAGCT GAGTGACAAGTGCAGGGAAGCTCTGGCGGAAGGTGGGTCTGCTGACATTGCTTTGAATGGGTTCATCACTGATGCGATTAGGAGCTAG
AA sequence Show only first row Show all	>Lus10026793 pacid=23176606 polypeptide=Lus10026793 locus=Lus10026793.g ID=Lus10026793.BGIv1.0 annot-version=v1.0 MAHTDSNLGTLKHTTKRAELVFIPSPGVGHITALAQLAQLLVARDDNLWITILIMHLPHGDANYTNHTTALASTSSALSDRVKFVDLPPNDAAVDPAAKD VVSFFMYSYKSHIRDAVSKLVDQSPFLSGFLVDMFCTTFIDVAVEFGLPSYVFYTSGAGCLNLTLYFQNLRDAQNVPVSDFNNPVADWKIEGFANSIPGK VLPRPVLNPYQCDGFLNFVQNYRNAKGIVINTFPELESATIEHLSKGGNPPVYPVGPILELKRGGGDVKDKGRSSDIMNWLNEQPPSSVVFLCFGSNGCF NEKQVKQIAEALERAGYRFLWSLRRPPPKGTVSFPLDYENPSDVLPEGFLERTTGLGKIIGWAPQAAILAHSAVGGFVSHCGWNSILESLWFGVPIATWP IDGEQQLNAFEMVKEWGLGVDIKMEYSKEFGVDEDDVITVSSDEIEKGLKGLMEDQGGEVRERVRKLSDKCREALAEGGSADIALNGFITDAIRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	0	1
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	1.4	0.9443
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	13.3	0.9528
AT3G24530			AAA-type ATPase family protein...		Lus10011096 [exp]	13.9	0.8831
AT5G42320			Zn-dependent exopeptidases sup...		Lus10016010 [exp]	23.8	0.8336
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	24.9	0.9403
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	25.5	0.9379
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	25.8	0.9402
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	36.1	0.9368
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	39.1	0.9362
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	42.0	0.9346

Compare expression of checked genes

Lus10026793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.