Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21750 433 / 7e-149 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21760 430 / 1e-147 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 427 / 2e-146 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21790 421 / 6e-144 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 408 / 5e-139 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 392 / 6e-133 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07250 377 / 4e-127 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15260 366 / 2e-124 UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 368 / 1e-123 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT2G29750 366 / 1e-122 UGT71C1 UDP-glucosyl transferase 71C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 801 / 0 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 460 / 4e-159 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 426 / 7e-146 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 406 / 4e-138 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10039037 [exp] 382 / 1e-128 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 324 / 6e-106 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 324 / 8e-106 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 292 / 6e-94 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 261 / 1e-81 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017100 [exp] 491 / 1e-171 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017232 [exp] 488 / 1e-170 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 479 / 9e-167 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G016500 [exp] 476 / 5e-166 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017400 [exp] 471 / 9e-164 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017300 [exp] 461 / 1e-159 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.006G007600 [exp] 459 / 4e-159 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 441 / 6e-152 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007200 [exp] 439 / 2e-151 AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 433 / 7e-149 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10026795 pacid=23176537 polypeptide=Lus10026795 locus=Lus10026795.g ID=Lus10026795.BGIv1.0 annot-version=v1.0 ATGGAAGAGACGCAACAGCAGCAGCTGGTATTCATCCCATCTCCAGGCGTTGGCCACCTAGTTTCAATGGTGGAGCTAGCCAGGCTCCTCGTCCACCGCT ACTCCACTCTCTCCGTCTCCCTTCTCATCATCACTTCCCCCGCCACCGCCACCTTAACCGGCCGCTACATCGAATCGCTTTCTTCAAACTTAACCCCGCA AATCCAGCTCGTCAACCTCCCTAACGATGACTCCAATCCAGCCTCTAGCCTTCTCTCCATTATCGAATCTCAAAAGCCAATAGTCACTGAAGCCGTCGCC GCCTCCCTATCGGGTTCCACTTCACCTCGACTCGCCGGGTTCGTCCTAGACATGTTCTGTACCTCTATGCTGGAAGTGGCCGACGAGTTCAACGTCCCAT CTTACATTTTCTTCACATCCGGTGCCGCTTTTCTCGGGTTCATGCTCCGCATACAGTCCTTGCACGACGACGAAGGGTTCGACGTTACCGAGTCCGAGGA AGCTGAGTTGGTCATACCGAGTTATTCCAACCCGGTCCCACGCAAGGTCTTCCCTTCCACCGTTCTGAAAAAGGATTGGGCGGCGGTGCTTTACAGACTA GCTAGAGATTTCAGGAAAACAAAGGGTATTCTCGTCAATACAGTCAAGGAGGTGGAATCCTACGCTATCGACTCTCTCTCACGCGGTTTAATAAACAACC CCAATATCTATACGGTGGGGCCCATTCTCAACCTCAAGGAAGACACGTCGTCGTCAAACAGCAATGACGTCATTCAGTGGTTAGATGAAAAGCCGGAGTC GTCGGTAGTATTCCTCTGCTTCGGGAGCATGGGAGCCTTCGGTGAGGAGCAGGTGAAAGAGATAGCCTGTGCCCTGGAGCAAAGCGGATTAAGGTTTCTT TGGTCCCTCCGCCGACGATCTGAAAAGGAAGCAGGGTGGGCCAGCCCGACGGATTACGAAGACGTCAGTGAAGTATTGCCGGAGGGGTTTCTTAACAGGA CGGCGGAAGTCGGAAAGGTTATAGGATGGGCTCCACAGACGGCGGTGCTGGCCCATAAAGCAGTTGGAGGGTTCGTATCGCACTGTGGGTGGAATTCGAC GCTGGAGAGTTTATGGTTTGGGGTGCCGATGGCGACATGGCCGTTGTACGCGGAGCAGCAGATAAATGCGTTTTTAGCGGTGAAGGAGCTGGGGATAGGC ATAGAGATTAAGATGGATTATCGAGTTGAGAGTGGGGATGTTGTTAAGGCGGAAGAAATTGAGAGAGGAATAAGGAGTTTGATGGATAAGGATTGTGGGT TGAAGAAGAAGGTGGAGGAATTGAGAGATAGGATTAGAGAGGCGTTCGTCGATGGTGGTTCTTCTTCGTCTTCAATCGCCCAATTCATTCAAGATTTGTG A
AA sequence Show only first row Show all	>Lus10026795 pacid=23176537 polypeptide=Lus10026795 locus=Lus10026795.g ID=Lus10026795.BGIv1.0 annot-version=v1.0 MEETQQQQLVFIPSPGVGHLVSMVELARLLVHRYSTLSVSLLIITSPATATLTGRYIESLSSNLTPQIQLVNLPNDDSNPASSLLSIIESQKPIVTEAVA ASLSGSTSPRLAGFVLDMFCTSMLEVADEFNVPSYIFFTSGAAFLGFMLRIQSLHDDEGFDVTESEEAELVIPSYSNPVPRKVFPSTVLKKDWAAVLYRL ARDFRKTKGILVNTVKEVESYAIDSLSRGLINNPNIYTVGPILNLKEDTSSSNSNDVIQWLDEKPESSVVFLCFGSMGAFGEEQVKEIACALEQSGLRFL WSLRRRSEKEAGWASPTDYEDVSEVLPEGFLNRTAEVGKVIGWAPQTAVLAHKAVGGFVSHCGWNSTLESLWFGVPMATWPLYAEQQINAFLAVKELGIG IEIKMDYRVESGDVVKAEEIERGIRSLMDKDCGLKKKVEELRDRIREAFVDGGSSSSSIAQFIQDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	0	1
AT5G57345			unknown protein		Lus10001632 [exp]	1.4	0.9569
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	1.7	0.9436
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	2.0	0.9496
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	3.5	0.9339
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	4.9	0.9203
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	6.3	0.9067
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	6.3	0.9249
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	6.7	0.9272
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	6.9	0.9283
AT5G57345			unknown protein		Lus10001438 [exp]	7.4	0.9313

Compare expression of checked genes

Lus10026795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.