Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11280 121 / 9e-34 unknown protein AT1G80190 107 / 3e-28 PSF1 partner of SLD five 1 (.1) AT1G80200 93 / 9e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036085 [exp] 399 / 1e-136 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10025699 [exp] 142 / 2e-41 AT1G80190 283 / 4e-97 partner of SLD five 1 (.1) Lus10035964 [exp] 136 / 6e-39 AT1G80190 275 / 2e-94 partner of SLD five 1 (.1) Lus10002030 [exp] 123 / 4e-34 AT5G11280 323 / 2e-113 unknown protein Lus10002898 [exp] 97 / 2e-24 AT5G11280 281 / 1e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061800 [exp] 148 / 3e-41 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1) Potri.006G251600 [exp] 129 / 7e-37 AT5G11280 327 / 6e-115 unknown protein Potri.006G142300 [exp] 112 / 1e-30 AT1G80190 290 / 6e-101 partner of SLD five 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026797 pacid=23176585 polypeptide=Lus10026797 locus=Lus10026797.g ID=Lus10026797.BGIv1.0 annot-version=v1.0 ATGAGGATCACTACGGAGCTCTTGTTAATGGCCTATGTGTATAACCGAGCAGAAGTTATACATAGTTTGGCGTGGAAACTGGGGTTTGAGCTTCCAGAAG AAATTCAAGAGAAGCTCAGTGACACAGAGAAAAACTATTTTGGGAAGCATTCTGCTGCTCTACAGTCCTACATGGCTGATGCAGATATTGACCTGAACGT GGACATGGTGCCGCCTAAAGATCCTTACATCAAGGGGAGCTTCAACTGCATAGCCCCAAAGCATCGCCTTGGTCTGCTCATCTGCCCAAAAACTGCTGTA ATGGCTTCTCCAAGGAAATGGGCAGCCATCATCTCCTTCATTGCTCACTGCCTTCATTTTCTAATCATAATCCTCCAAGTTCCTCTTTTCAGGATGCCAT GTACAACAGGGAAATGTTCATCACCCGTAGAAATGACATGCTCTCAGTTGACAGCGACCGAAATCTTCCCTCCCCTTTTGGTGAAGCTTCTTCTTTACCC TGGAGCCGTTGCAAAAGCCTCCTTACGCAACAAACAAATATCGAAATTCAGGGCAATACTGGGATTGGTGAGGCCTGGGAGGATGAGTTTGTTTGGAGCA CTTATGATTGTTTGGGGCTTTGCTAGAGAACTCATTCTGACAACATCTGCTAATAAGAAGAAGCCTACTTACATGTACCCACAGATGTTCCTCGCCGTCC GTTGTGCTTTCTTGTCCATAAGGAAGGATGTTAAATCTGGATCCAAATACTTGTGA
AA sequence Show only first row Show all	>Lus10026797 pacid=23176585 polypeptide=Lus10026797 locus=Lus10026797.g ID=Lus10026797.BGIv1.0 annot-version=v1.0 MRITTELLLMAYVYNRAEVIHSLAWKLGFELPEEIQEKLSDTEKNYFGKHSAALQSYMADADIDLNVDMVPPKDPYIKGSFNCIAPKHRLGLLICPKTAV MASPRKWAAIISFIAHCLHFLIIILQVPLFRMPCTTGKCSSPVEMTCSQLTATEIFPPLLVKLLLYPGAVAKASLRNKQISKFRAILGLVRPGRMSLFGA LMIVWGFARELILTTSANKKKPTYMYPQMFLAVRCAFLSIRKDVKSGSKYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11280			unknown protein		Lus10026797 [exp]	0	1
					Lus10036784 [exp]	3.5	0.8461
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	4.9	0.8181
					Lus10027007 [exp]	8.9	0.7558
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	11.8	0.8093
					Lus10017551 [exp]	12.5	0.8623
					Lus10035120 [exp]	16.4	0.7874
AT1G73120			unknown protein		Lus10022961 [exp]	19.1	0.8323
					Lus10042085 [exp]	21.6	0.7458
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	26.4	0.7485
AT2G35470			unknown protein		Lus10035375 [exp]	27.9	0.7190

Compare expression of checked genes

Lus10026797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.