Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80170 355 / 7e-120 Pectin lyase-like superfamily protein (.1) AT3G57510 246 / 1e-77 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G70500 247 / 2e-77 Pectin lyase-like superfamily protein (.1) AT1G23460 246 / 5e-77 Pectin lyase-like superfamily protein (.1) AT2G41850 241 / 1e-75 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT3G07970 229 / 6e-71 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT4G01890 218 / 4e-66 Pectin lyase-like superfamily protein (.1) AT1G56710 217 / 4e-66 Pectin lyase-like superfamily protein (.1) AT1G02460 216 / 2e-65 Pectin lyase-like superfamily protein (.1) AT1G48100 211 / 1e-63 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036084 [exp] 692 / 0 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 252 / 2e-79 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 250 / 6e-79 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 248 / 1e-77 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 240 / 7e-76 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 240 / 2e-74 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 234 / 7e-73 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 213 / 4e-64 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 211 / 5e-63 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171900 [exp] 405 / 2e-139 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 258 / 1e-81 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 254 / 4e-80 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 252 / 1e-79 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 252 / 2e-79 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 245 / 1e-76 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 239 / 1e-74 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.005G005500 [exp] 238 / 7e-74 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 230 / 7e-71 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 226 / 2e-69 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10026798 pacid=23176546 polypeptide=Lus10026798 locus=Lus10026798.g ID=Lus10026798.BGIv1.0 annot-version=v1.0 ATGAAAAACTCGCAACTTTGCTGCTGTTATTGGAAGACACCTTCTGTTATCCTTCTTCTCTCGATTGTACTAATAATTGTTTGCGCAGAAGGATTCGAGT CCGGGCTGGAGCTCCAGCAATCTGGGTCTGCCTCTGTTATTAGAAGATACAGAACTAGAAAGGTTATTTACATCCATGATTTCGGAGCTGCTGGCGATGG GGTTCAGAATGATACCCAGGCCCTGGAAGATGGTTGGGAGATTGCTTGTTCGTTACCAAAAAGAAGTAGAATCGTACTCCCAATTGGTACCTATCTTGTG CACCCTGTTGTTCTCTCAGGGCCTTGCAAATCCAAAATCATTTTCAGTATAGCGGGGACAATTGTTGCACCCCAAGATCCTCAAGCTTGGAGGGGAATGA ATCATCGTAGGTGGCTCTACTTCGCAAAGGTAAACCACCTTCGATTTGAAGGAGGAACAATCAACGGCATGGGACGACAGTGGTGGACTAACTCTTGCAA GACCTATAAGAAAAATGTTTCATGTGTTCCCTTACTACTGCAGGCCCTTACATTCCACAGATGCAAGGATTTGAAAGTTGGGAATCTTAGATTGGTCGAT AGTCAGCAAATGCACATTGCATTCACCAATTGTGTTCATGTTTCAGTTTCGCAACTTGAAGTGCTAGTACCTGCTTTTACTCCTAATACTGATGGCATCC ATATAAGTTCATCTAGTGTTCATGTTACGAATACTGTCATCAAAACAGGAGATGACTGCATCTCCATTGTAGGCAATTCTTCAAGAATCAATGTAAAAAA TGTTGTATGTGGACCAGGGCATGGAATTAGTATCGGAAGCTTGGGAAAATCAAACTCAACAGATTTTGTGGAAAGTGTATCAGTTGATGGAGCATTCTTG TCCAACACACAGAATGGTTTGCGGATAAAGACATGGCAGGGAGGGAGTGGTAAAGCTAGTGACATCAACTTCCAGAATGTGCATATGGAAAATGTATCAA CCCAATTATCATTGATCGATTCTACTGCGATTCCAAATCCCCGTGTGCAAACCAGTGAAGGAGGAGTCACTGAGTCATTCTGCTGGGAAGCTTATGGCTC AAGCGGTGGATCAGTGTTTCCTCATCCATGCTTCACGTCTGATGAACAGTTCATCAAGCAGAATATCCCTCACCAAAAAATTTCTTTATTCAACCTGAGG AGGTAA
AA sequence Show only first row Show all	>Lus10026798 pacid=23176546 polypeptide=Lus10026798 locus=Lus10026798.g ID=Lus10026798.BGIv1.0 annot-version=v1.0 MKNSQLCCCYWKTPSVILLLSIVLIIVCAEGFESGLELQQSGSASVIRRYRTRKVIYIHDFGAAGDGVQNDTQALEDGWEIACSLPKRSRIVLPIGTYLV HPVVLSGPCKSKIIFSIAGTIVAPQDPQAWRGMNHRRWLYFAKVNHLRFEGGTINGMGRQWWTNSCKTYKKNVSCVPLLLQALTFHRCKDLKVGNLRLVD SQQMHIAFTNCVHVSVSQLEVLVPAFTPNTDGIHISSSSVHVTNTVIKTGDDCISIVGNSSRINVKNVVCGPGHGISIGSLGKSNSTDFVESVSVDGAFL SNTQNGLRIKTWQGGSGKASDINFQNVHMENVSTQLSLIDSTAIPNPRVQTSEGGVTESFCWEAYGSSGGSVFPHPCFTSDEQFIKQNIPHQKISLFNLR R

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	0	1
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10004691 [exp]	1.4	0.9277
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	6.2	0.9330
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	6.7	0.9239
					Lus10027950 [exp]	7.8	0.8924
AT5G58160			actin binding (.1)		Lus10036612 [exp]	8.9	0.9073
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	10.5	0.9184
AT2G30105			unknown protein		Lus10031291 [exp]	11.0	0.9147
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10001575 [exp]	18.2	0.8722
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	18.2	0.9227
AT3G27870			ATPase E1-E2 type family prote...		Lus10022238 [exp]	20.5	0.9071

Compare expression of checked genes

Lus10026798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.