Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12270 92 / 4e-20 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 81 / 2e-16 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 75 / 2e-14 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G12900 68 / 3e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 63 / 1e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 63 / 2e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 62 / 3e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 61 / 1e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G15550 60 / 1e-09 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G17020 60 / 2e-09 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036082 [exp] 180 / 7e-52 AT1G55290 395 / 2e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019563 [exp] 116 / 2e-28 ND / Lus10038080 [exp] 101 / 6e-25 ND / Lus10012405 [exp] 87 / 3e-19 ND / Lus10032678 [exp] 82 / 1e-17 ND / Lus10015964 [exp] 83 / 3e-17 ND / Lus10022026 [exp] 78 / 5e-16 ND / Lus10010621 [exp] 74 / 2e-15 ND / Lus10020449 [exp] 73 / 2e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006800 [exp] 99 / 3e-23 AT3G13610 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G007100 [exp] 100 / 5e-23 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006901 [exp] 99 / 2e-22 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G097900 [exp] 79 / 7e-16 AT3G12900 471 / 4e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 68 / 5e-12 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146100 [exp] 67 / 7e-12 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 67 / 1e-11 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 66 / 2e-11 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G451600 [exp] 64 / 6e-11 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 64 / 7e-11 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10026801 pacid=23176557 polypeptide=Lus10026801 locus=Lus10026801.g ID=Lus10026801.BGIv1.0 annot-version=v1.0 ATGCTGAAGATTGATGGTAAAGATGTGGCACGGGTATATGGTCTGGTTTGTGATACAAGACTGGAGAAAATGGATGTCAGACATTGCTCGGTGGTGGTTC TTCAACATTTTGCACAATTCACTGGCATGAAATTAACGAGTCATGAAGCAACGAACACGTCCCTCCCTGACGTGCTCGATGTTATGAAGAACTGTGACGA TCCAAAAGCGTGGACTAAGCTTTACATGTTGCTATCCATTGGTTGCCTCGTTGTGCCAACAAACGCACTTCAGATCTTGATGAACTATGCCAAGTTTTTG AATCATGATTTTGGAGAGATTGTTCAGTACAATTGGGGTAAGCACGTATCCGATTTTCTCCTTCAAGGGCTTGAGGATTTTAAGCACAATCACAAGTCTG GATATCCGAGTGGTGATATGAACTTAATGGTGATATTTGTGTTGGGTAACCTTGCCATTGCTGAGGTGCGTACCAAGAAAGAGAGGGTACAACTTCAATG TAATCTGTTGATGGCCGAAGAGATTGATTTATATATGTGGGAGTTAAGGTCCAACCACATACAAAACATATTATGCAAAGGGAAGAAGTTACCAAATACA TGGCAAGACAAGAAGGAAGATGAAAAAAATATTTCACCTAAGTACCTTGAGGAAGAGGAAGAGTACCAGGGACAGAGAGATGAAGAGGAAGAAGATCATG AAAGGGACTCGAATAGTGAGTCTGAGGAGTTGTTGACCTCAACATCTTCCAGCTCACGTTCAGAGAAATCTGACGGTGAACGAGCACTCGTACCGAGTGC AGTGAACGAGATTGGCAAGCAAGCTGTTGGAGAAGCATCTAGAGAGACAGAGTCGGCAGATGAATGCTTGAAGGGTATGAAAGAAGTTAAGGATGCGAAG AAGAGGGTGACCAGGGAACCATCTTCTTCGAAGAAAGCAACCAAAACCCCTATCAATTACAAGCGTCCAAAGAATATTATCAATCACGGTATCCCTAACC AAGTTCTGGGTGAAGTCATAGATGCAGCTCATGCTTTCTACGGCCAGAACAATGAGGAGAGACGCCACTACTGGAAAGGCAATTCCCCTTCTCCCACTGT TTTCTACACCACCAGCTTCAGCCCTTTGGCTGAGAAAGTCCCCGGGTGGAAGGATTTCTTGATGTTTCAGTATGTTTCAGGGGATGAAGATGCATATGCC CTTTCGCCTCCTGTTTGCAAAGATGAAGTGCTTGATTACATGAAACGAGCTGAACCAGTGGTTAAGAAGTTGGTAGAGCTGCTACTGAAGAAGATGAACG TGGAGAAGGACGATGCAGCAGGGCTCTACGTTAAGGGAACCCAAGACAAGTCTTGGATTCCAGTTCCACCAGTTGAAGGAGCGGTTATGGTCAATGTTGG GGATGTGTTGCAGATAATGAGCAATGACCTCTACAAAAGCGTGGAGCACCGTGCATTTCCCAGCAACACTAGGAACAGGGTTTCAGTCCCCTGTTAA
AA sequence Show only first row Show all	>Lus10026801 pacid=23176557 polypeptide=Lus10026801 locus=Lus10026801.g ID=Lus10026801.BGIv1.0 annot-version=v1.0 MLKIDGKDVARVYGLVCDTRLEKMDVRHCSVVVLQHFAQFTGMKLTSHEATNTSLPDVLDVMKNCDDPKAWTKLYMLLSIGCLVVPTNALQILMNYAKFL NHDFGEIVQYNWGKHVSDFLLQGLEDFKHNHKSGYPSGDMNLMVIFVLGNLAIAEVRTKKERVQLQCNLLMAEEIDLYMWELRSNHIQNILCKGKKLPNT WQDKKEDEKNISPKYLEEEEEYQGQRDEEEEDHERDSNSESEELLTSTSSSSRSEKSDGERALVPSAVNEIGKQAVGEASRETESADECLKGMKEVKDAK KRVTREPSSSKKATKTPINYKRPKNIINHGIPNQVLGEVIDAAHAFYGQNNEERRHYWKGNSPSPTVFYTTSFSPLAEKVPGWKDFLMFQYVSGDEDAYA LSPPVCKDEVLDYMKRAEPVVKKLVELLLKKMNVEKDDAAGLYVKGTQDKSWIPVPPVEGAVMVNVGDVLQIMSNDLYKSVEHRAFPSNTRNRVSVPC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10026801 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	6.5	0.8375
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	12.0	0.8012
AT1G10660			unknown protein		Lus10029133 [exp]	13.9	0.8352
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10013576 [exp]	18.0	0.7644
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	18.7	0.8113
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028881 [exp]	24.4	0.8129
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	27.7	0.7929
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	28.1	0.8105
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	36.8	0.8041
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	39.3	0.7879

Compare expression of checked genes

Lus10026801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.