Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19485 633 / 0 transferases;nucleotidyltransferases (.1) AT2G34970 91 / 4e-19 Trimeric LpxA-like enzyme (.1) AT4G18300 63 / 2e-10 Trimeric LpxA-like enzyme (.1) AT3G02270 54 / 1e-07 Trimeric LpxA-like enzyme (.1) AT3G55590 46 / 3e-05 Glucose-1-phosphate adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036081 [exp] 907 / 0 AT5G19485 638 / 0.0 transferases;nucleotidyltransferases (.1) Lus10018991 [exp] 65 / 6e-11 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10033841 [exp] 65 / 8e-11 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10004699 [exp] 44 / 0.0002 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 44 / 0.0002 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066400 [exp] 734 / 0 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 716 / 0 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1) Potri.005G045200 [exp] 75 / 4e-14 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.006G090300 [exp] 44 / 0.0002 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10026802 pacid=23176590 polypeptide=Lus10026802 locus=Lus10026802.g ID=Lus10026802.BGIv1.0 annot-version=v1.0 ATGGATTTTCAAGTTGTAGTACTAGCCGGCGGCACTTCGAAAGAGCTGCTTCCTCTCGTCTCCAAGGAACTGCCTAAAGCTTTGCTTCCTGTTGCTAACC GCCCTGTTCTCTCTTACGTTTTGGACCAATTGGAACTCTGCAACCTTAAGGATCTCATTGTGGTTGTTGAAGGTGAAGATGCAGGTCTTCGTGTTAGTGG GTGGATTTCAGCAACTTATGTTGATCGCCATGTTGAGGTTGCTGCTGTTCCTGAGGATGTTGGAACTGCTGGTGCTCTTCGTGCCATTGCACACCGCTTG ACTGCAAAGGATATTCTGGTTGTGAGTGGTGATCTCGTCTCTGATGTTCCTCTTGGTGTTGTTGCAGCTGCTCATAGAAGATATGATGCTGTATTAACCA CATTGCTCTGCTCTACTCCGATAAGTGGGCCTGCAGAATCTGGATCCACTGGTGCAAAGGACAAGATCAAGAAACCTAAGCGCTACAACCTCATCGGACT GGACCCAACAAAGCAATTTTTGTTGTACATAGCCACAGGAGCAGAAGTTGAAAAGGACATCCGCATCTACAAGAGTATTCTTCATGCAGTTGGTCAGATA GATATTCGAGCTGATCTTATGGATGCTCATCTGTATGCATTCAAGAGGGCTGCTCTGCTGGATGTCTTAGAACGGAAGGAAGAGTTCCGAAGCTTACGAC AGGATGTCCTACCTTATCTTGTTCGGACTCAATTGAAATCAGATATATTGCCAAATGGTTCTCCACAATCAGAAGAAAATGGAGATGAGGTCACCAATTC TCAGAGCAACCACAAAATGGTAGCTCAAATATTATCCAATGCATCTACACCAGGTTATCATGAAGTTTATGAGTCGCGCCATAATGGATCTGCTCCAGTT CAAAGAACCCATAAATGCTGTGCCTATGTTGCCAGTAACAGCATGTATTGTGCACGCTTAAATTCTATTCAAGCATTCTGCGATATTAACCGCGATGTCA TTGCTGAAGCCAATCATCTCTCTGGATATACCTTTTCTGCTCATAACAATGTCATACATCCTGCAGCGCAACTTGGATCAAAGACTACTGTGGGGCCACA TTGTATATTGGGGGAAGGATCAGAAATGGGTGACAAATGCAGTGTGAAGCGCTCTGTTATTGGCCGTCATTGCCGGATAGGTTCCAATGTTAAGATTGTT AATTCAGTTGTGATGGACCATGCTACCATTGGAGATGGCTGTTCAATCCAAGGTTCTATAGTTTCGAGCAACGTCCAGATCCAGGAACGAGTTGTGCTGA AAGACTGTCAGGTTGGAGCTGGCTTTGTGGTTATTTCTGGTAGCGAATACAAAGGAGAGTCGTTAGCAAGGAAATAA
AA sequence Show only first row Show all	>Lus10026802 pacid=23176590 polypeptide=Lus10026802 locus=Lus10026802.g ID=Lus10026802.BGIv1.0 annot-version=v1.0 MDFQVVVLAGGTSKELLPLVSKELPKALLPVANRPVLSYVLDQLELCNLKDLIVVVEGEDAGLRVSGWISATYVDRHVEVAAVPEDVGTAGALRAIAHRL TAKDILVVSGDLVSDVPLGVVAAAHRRYDAVLTTLLCSTPISGPAESGSTGAKDKIKKPKRYNLIGLDPTKQFLLYIATGAEVEKDIRIYKSILHAVGQI DIRADLMDAHLYAFKRAALLDVLERKEEFRSLRQDVLPYLVRTQLKSDILPNGSPQSEENGDEVTNSQSNHKMVAQILSNASTPGYHEVYESRHNGSAPV QRTHKCCAYVASNSMYCARLNSIQAFCDINRDVIAEANHLSGYTFSAHNNVIHPAAQLGSKTTVGPHCILGEGSEMGDKCSVKRSVIGRHCRIGSNVKIV NSVVMDHATIGDGCSIQGSIVSSNVQIQERVVLKDCQVGAGFVVISGSEYKGESLARK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19485			transferases;nucleotidyltransf...		Lus10026802 [exp]	0	1
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	3.9	0.7508
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	9.8	0.7247
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10004716 [exp]	11.0	0.7348
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	15.2	0.7765
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10025361 [exp]	20.3	0.7444
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	20.3	0.7515
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	26.3	0.7473
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020139 [exp]	38.4	0.7004
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	45.8	0.7301
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	47.5	0.6996

Compare expression of checked genes

Lus10026802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.