Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26760 362 / 5e-123 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT5G06150 355 / 2e-119 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 327 / 7e-109 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT4G37490 317 / 8e-105 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT1G20610 249 / 2e-78 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 245 / 9e-77 CYCB2;4 CYCLIN B2;4 (.1) AT4G35620 229 / 8e-71 CYCB2;2 Cyclin B2;2 (.1) AT1G16330 232 / 1e-69 CYCB3;1 cyclin b3;1 (.1) AT2G17620 219 / 1e-66 CYCB2;1 Cyclin B2;1 (.1) AT1G44110 199 / 5e-59 CYCA1;1 Cyclin A1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036080 [exp] 688 / 0 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10003800 [exp] 289 / 2e-93 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10039033 [exp] 285 / 1e-91 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10016015 [exp] 259 / 2e-82 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 259 / 2e-81 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10010483 [exp] 254 / 7e-81 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1) Lus10013226 [exp] 239 / 9e-75 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 238 / 3e-74 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10001765 [exp] 215 / 3e-62 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066600 [exp] 449 / 8e-157 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.001G272000 [exp] 441 / 8e-154 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.016G033000 [exp] 364 / 5e-123 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 352 / 4e-118 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.002G010000 [exp] 270 / 3e-86 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 254 / 2e-80 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 253 / 4e-80 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 251 / 4e-79 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.010G173200 [exp] 227 / 1e-67 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 212 / 6e-62 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026803 pacid=23176577 polypeptide=Lus10026803 locus=Lus10026803.g ID=Lus10026803.BGIv1.0 annot-version=v1.0 ATGAATTTGAACTCAGATTTGGAGGGATGTTCGAGGGTTTGGATGCAATTCTTTGTTATTGATTTGAGTTTCGTCAATTTCCTTGGATCAGGGGAAATTA AGCAGAGGAATGCAAGGAACAGAAGAGTTCTCCAAGATATCGGAAATCTTGTGATTGATGGAGGAGACCAAGGGAAGAAGCAGAAGGCGATTGTTGGCCG TGGAGTTACTAGAGCAGCAACAAAGAAGGAAGTAGAGAAGACGAAGGAGGTTGAGATAATTGTGATTAGCTCTGACGATGACAGCGAGAAGCCTGCTGCT GCTAGACCTGTTAGCAGAAGACAAGTAGTTACAAGGGAAGAGCCACAAAGAAAGAAGGCTGTCAAAACTGTCACCGCAATCCTCACTGCACGAAGCAAGG CTGCATGTGGACTCAAGAACAGGCCAAGAGATCTGGTGGTGGATATAGATATTGCTGATGTTGACAACCATCTTGCAGTTGTAGAGTATGTTGATGATCT CTACAATTACTACAAGCTCGCTGAGGTTGATAGCATAGTTCATGATTACATGGAAATCCAGCCGGATGTTACTGCAAAGATGCGATCAATTCTGGTGGAC TGGTTGATTGAAGTTCATAGGAAGTTTGAGTTGATGCCTGAAACTCTGTATCTGACCTTGAACATTGTTGACCGTTTCATGGCTGTGAAAACAGTAACAA GGAGGGAACTTCAGTTAGTGGGTATCAGTGCAATGCTTATTGCTTGCAAATATGAGGAGATATGGGCACCACAGGTCCATGATTTTGTTTGCATATCCGA CAAAGCATACACAGGAGAGCAAGTTTTGTTGATGGAGAAAGCGATCCTGCAGAGGCTGGAATGGTATTTGACAGTTCCTACACCATACGTGTTCTTGGTC AGATATGCTAAGGCTTCTGTTCCGCATGACATTATGGTAGAGAATATGAGCTTCTTCTTGGCAGAGCTGGGGCTGGTGCAATACTCAGTTGCCGTATCCT ACAGCCCCTCCTTGATAGCTGCTTCTGCAGTGTTTGCTGCTCGTTGCACCCTGCACAAAACTCCCATCTGGGATGAGACTTTGAAGCACCACACTGGCTA CAAGGAAGATCAATTGCTGGGATGTGCAAAGCAGCTGGCTGAACTGCATTCGGGTGCAGGGGAGAGTAAGCTGAAGGCAGTTGTGAAGAAGTTCTCAAGT GCAGATCGTGGCAGTGTGGCTCTCCTTCCTGCTGCCAAACTGCTGCTTGCTGTGTCCTCCTCACCAGCCTTGGATGAAGTGCAGTAG
AA sequence Show only first row Show all	>Lus10026803 pacid=23176577 polypeptide=Lus10026803 locus=Lus10026803.g ID=Lus10026803.BGIv1.0 annot-version=v1.0 MNLNSDLEGCSRVWMQFFVIDLSFVNFLGSGEIKQRNARNRRVLQDIGNLVIDGGDQGKKQKAIVGRGVTRAATKKEVEKTKEVEIIVISSDDDSEKPAA ARPVSRRQVVTREEPQRKKAVKTVTAILTARSKAACGLKNRPRDLVVDIDIADVDNHLAVVEYVDDLYNYYKLAEVDSIVHDYMEIQPDVTAKMRSILVD WLIEVHRKFELMPETLYLTLNIVDRFMAVKTVTRRELQLVGISAMLIACKYEEIWAPQVHDFVCISDKAYTGEQVLLMEKAILQRLEWYLTVPTPYVFLV RYAKASVPHDIMVENMSFFLAELGLVQYSVAVSYSPSLIAASAVFAARCTLHKTPIWDETLKHHTGYKEDQLLGCAKQLAELHSGAGESKLKAVVKKFSS ADRGSVALLPAAKLLLAVSSSPALDEVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10026803 [exp]	0	1
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10007735 [exp]	5.5	0.8991
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	5.5	0.9306
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	5.8	0.9460
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	7.9	0.9324
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	9.4	0.9242
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	9.7	0.9383
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	10.0	0.9319
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	13.0	0.9250
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	17.3	0.9154
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	17.8	0.9292

Compare expression of checked genes

Lus10026803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.