Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026804 pacid=23176539 polypeptide=Lus10026804 locus=Lus10026804.g ID=Lus10026804.BGIv1.0 annot-version=v1.0 ATGCCTGGCTGGGCTTCACGGTGGTCGGAATCTGACGCCGGCCTGATGATATATCTGCCCGGAATTTCGCCCGGACAGACCAAAAATTACTGTATTTTAA AGAAAAATTTTCCGAATACTAGTGGCGCTAAAGCTGCTGAGTGCTCCTTTCTTCATTTCAGGTGTGCGTCGCTCCTTTTCTTCACATCCAACGCCAGAGA CTTTCTGAACCCTAATTTCCCAGTTCCGACTAACTGCTCCATCGAACCCTCCAAGTTTGAAGTTTTATGTCTAACTACGCAGTTCGCACCCTTACCAGGT AGAGCTTCCAGCAACTGCGTGGCGGAAATGGCAGTGTTCCATTTGGACTCCGACTCCTACTTTCTCAACACCAACCCTGATGACAGTAAGGTTTATGTGA ACAAGAATATGGGGTTTGAGAATTGGGAGTACTTGACTTGTATAGGGAATGGTGAAAAGTACACAGAACTGCAAGTTTCAGGAGTGGTCATCCGAGGCCA CAAGCTGCACGAATTGGCTGTTGACTTGAGACCCATTATGTTCTAA
AA sequence Show only first row Show all	>Lus10026804 pacid=23176539 polypeptide=Lus10026804 locus=Lus10026804.g ID=Lus10026804.BGIv1.0 annot-version=v1.0 MPGWASRWSESDAGLMIYLPGISPGQTKNYCILKKNFPNTSGAKAAECSFLHFRCASLLFFTSNARDFLNPNFPVPTNCSIEPSKFEVLCLTTQFAPLPG RASSNCVAEMAVFHLDSDSYFLNTNPDDSKVYVNKNMGFENWEYLTCIGNGEKYTELQVSGVVIRGHKLHELAVDLRPIMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026804 [exp]	0	1
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	12.4	0.7288
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	29.4	0.6902
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	60.9	0.6464
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	72.4	0.5734
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	98.0	0.6296
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	109.5	0.5633
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10021755 [exp]	197.1	0.5593
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10015621 [exp]	245.9	0.5650
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10033086 [exp]	247.3	0.5505
					Lus10040651 [exp]	257.5	0.5536

Compare expression of checked genes

Lus10026804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.