Plant FIBer expression Database

Lus10026805 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43760 261 / 1e-89 molybdopterin biosynthesis MoaE family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036076
[exp]
377 / 5e-126 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G272100
[exp]
289 / 1e-100 AT2G43760 270 / 6e-93 molybdopterin biosynthesis MoaE family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02391 MoaE MoaE protein
Representative CDS sequence
>Lus10026805 pacid=23176604 polypeptide=Lus10026805 locus=Lus10026805.g ID=Lus10026805.BGIv1.0 annot-version=v1.0
ATGACAAAGATGGAATATGAAGACAAGAACTTGATTGAAATTTTAGAAGAAAATGTGCTCATTGACGTTGCCAAATACATGAGCTATGTAAGTGCTCCAC
ATGCTGGTGCAGTCTCAACATTTTCAGGAACAACGCGAGACAGCTTTGATGGGAAGACAGTGGTGGAGCTGCGATACGAGGCATACATGCCAATGGCAGT
GCGCCAAATCAAATCCATTTGTTCAACTGCAAGAGCATCCTGGGAGATCCATGCCATAGCTGTTGCCCACCGGCTAGGTGCAGTTCCGGTGGGAGAAACG
AGCATCTTCATTGCGGTATCAGCTGTTCATCGTGCTGATTCGTTGGACGCTTGTAAGTTTATGATTGATGAGTTGAAGGCAACTGTACCAATATGGAAGA
AGGAGGTTTACTCAAACGGAGAAGTTTGGAAGGAGAATTCCGAGTTCATCGAACGGAGAATAGAGCCAGGAACCACAAGGAATGGCTGTTGCAAATTGAA
AGTTGAGGTTGGCGCACCTAGTGGCGTGAAATCTTGCTGTAGACCTAAGGTCAAGGTTATTGATGATGAAAAACAAGTTGATATGAATTGA
AA sequence
>Lus10026805 pacid=23176604 polypeptide=Lus10026805 locus=Lus10026805.g ID=Lus10026805.BGIv1.0 annot-version=v1.0
MTKMEYEDKNLIEILEENVLIDVAKYMSYVSAPHAGAVSTFSGTTRDSFDGKTVVELRYEAYMPMAVRQIKSICSTARASWEIHAIAVAHRLGAVPVGET
SIFIAVSAVHRADSLDACKFMIDELKATVPIWKKEVYSNGEVWKENSEFIERRIEPGTTRNGCCKLKVEVGAPSGVKSCCRPKVKVIDDEKQVDMN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43760 molybdopterin biosynthesis Moa... Lus10026805
[exp]
0 1
AT3G45020 Ribosomal L18p/L5e family prot... Lus10021433
[exp]
1.4 0.9027
AT2G06530 VPS2.1 SNF7 family protein (.1) Lus10015642
[exp]
2.0 0.9003
AT1G56423 unknown protein Lus10029844
[exp]
3.9 0.8947
AT5G17060 ATARFB1B ADP-ribosylation factor B1B (.... Lus10009571
[exp]
4.0 0.8864
AT1G17455 ELF4-L4 ELF4-like 4 (.1.2) Lus10001250
[exp]
4.0 0.8460
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Lus10040307
[exp]
5.9 0.8693
AT1G69980 unknown protein Lus10010734
[exp]
6.0 0.8634
AT1G69980 unknown protein Lus10036679
[exp]
6.9 0.8660
AT1G07960 ATPDIL5-1 PDI-like 5-1 (.1.2.3) Lus10036125
[exp]
8.8 0.8608
AT5G17060 ATARFB1B ADP-ribosylation factor B1B (.... Lus10020392
[exp]
9.5 0.8488

Lus10026805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.