Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08760 654 / 0 Plant protein of unknown function (DUF936) (.1) AT3G14170 171 / 8e-46 Plant protein of unknown function (DUF936) (.1) AT4G13370 162 / 8e-42 Plant protein of unknown function (DUF936) (.1) AT1G23790 157 / 1e-40 Plant protein of unknown function (DUF936) (.1) AT1G70340 154 / 5e-40 Plant protein of unknown function (DUF936) (.1) AT3G19610 143 / 2e-35 Plant protein of unknown function (DUF936) (.1) AT2G31920 110 / 6e-25 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036076 [exp] 1201 / 0 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 165 / 2e-46 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 169 / 9e-46 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 171 / 2e-45 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 167 / 2e-44 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10012367 [exp] 163 / 6e-42 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 163 / 6e-42 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 154 / 6e-39 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 150 / 1e-37 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026200 [exp] 857 / 0 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 841 / 0 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 172 / 7e-46 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 163 / 6e-42 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 162 / 7e-42 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 161 / 1e-41 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 151 / 2e-38 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10026806 pacid=23176549 polypeptide=Lus10026806 locus=Lus10026806.g ID=Lus10026806.BGIv1.0 annot-version=v1.0 ATGGCAAATCTTGTCCCTGGGGTTTTGCTCAAGCTCTTACAACACATGAATACAGATGTGAAGGTTGCTGGTGAGCATAGATCGTCATTGCTACAGGTGG TGAGCATTGTACCAGCACTAGCAGGTGGCGAACTATTCCCTAATCAAGGGTTTTATCTTAAGGTGTCTGATTCTTCTCATGCTACTTTTGTCTCTTTACC CGAGGAGCATGATGATCTTATTTTGAGTGACAAGATTCAACTGGGACAATTCGTTCATGTTGAAAGGCTTGAAGCGGCCTCGCCAGTCCCTGTACTCAGA GGAGTTAAGCCAGTCCCAGGGAGGCATCCCTGTGTTGGAACCCCTGAGGACATTGTGGCTACTGATTCGCTCAGCTTCCTCAACAATAATCTTGAACCAA ATTCTAGCTTGAAGCATTCTGACAGTGCAAAGCCGCTGAGAAAAGGGGTTTTAGGTAATACTTATCCAGGAGAGAAGGAGAAATTTTCATCCAGAAGTAG TAGCGCTAACCAAGAGGATTTAAATTCTAAGAAAACCTCTTCTCTGGTGAGGACTAAATCCCAGTTGTCAAAAGCTCATTTAAACCTTGAATTGAAGAGA GAGTCTCTCCCGAAATTGAAACCAACGAGTTCAAGGTCAATTCCTTCTTCTCCAACCAGTTGTTACTCATTACCTAATTCATTTGAGAAGTTTTCAAGTG GGGTTAAGCAGCAGGCTAAAATTAAGGGGCTGGATAAGGGTTCTCCTAGGATGGGACTAGCAGAAAGAACGAGTTCTGCCAGTGGGGCAGCGACTGCTAG AAGAGTTCCCGTGATCAAGAACATAGTTCAGGGTATTGAGTTCGGAGCCAAGGCTTTGCGGAAGAGTTGGGAAGGAAGCATGGAAGTAAAGAAGAAGGAT TCCTCTAAATTGAAGGCTGCTAAACTAGAACTGAATCATGAAATTAGGAGTACCTCGGTTCCAAGGAAAAGTACGTCAAGTGAGCGTTCACTTCCTAGAG ATGACACTAAGGCCTGTGCTAAGTCATGCAAAGAGGAGAACAAAATTACCGTATCTTCTAAGAAAATTGTTCCTCCTGGTGGGATTATGGATGATCAAGA AAAGTTTAGTAAACACAGACTATCTGTTGGAAAGAGATCATCTGGAGAACTGGCTAATAATGGGCTGCCTGGAAACTTTGTCAAGGTTCCCATAAATAGT AAAAGGCTGAGTGAGGGGAGTGTTTCATGGACTTCTCTTCCTTCTTCTCTCTCTAAGCTTGGAAAGGAAGTTATGAAGCATAGAGATGCTGCACAGACAG CAGCTATTGAAGCCATGCAGGAAGCGTGTGCTGCGGAGAGCTTGCTTAAATGTCTGAGGATATACTCAGAGCTAAAGTCTTCTGCCCAAGAAGACAACCC GCAACCTGCTGTGGAGCTTTTTTTGGCTCTACATACAAGCTTGAACAATGTTCGCAACGTGACTGATTCTTTATCTAAAATGGTTCCTCTTGGATCATCA CCAAACTCTAGTGAAGATCTATCTCAAGAAGTGCAGAAGATGACCTCAGATAGACGTAAACATGCAGCCTATTGGGTTCAAGCTGCATTGTCTACCAATT TGTCATCCTTCACTATTTTTACCAAAGAAGCAACTTCTACTCTAGGTCCAGGGTCAACCTCCTCAGTGCAGAACCAAAAGTCTTCTGCTGTAAACCAACA TCTGCTAGTTCTGGAAAACTCGTCTAAAAATGCGGGCACAAAACCCGAAGCCAAAAACCGGCCAGTAGTCGGCTCCAAGCTTGTAGCCACAGGTGCTTTC CGCAAACAATTGGATCCATCGAGTACCAGTCAAAAGGTGCAGCCTCAACCACCTACAGAATGGCTAAGAGGGAATGGCCTTGACGAGGCAATGGACTTGG CTGAAACATTGCGGGTTGATTCCCAGAATTGGTTCCTGGCATTCGTGGAGAGGTTCTTGGATGCAGATGTGGACACATCGGCGCTATCAGATAACGGTCA AATAGCTGGGATGTTAACTCAGCTGAAAAGTGTGAATGATTGGTTGGATGGGATTGGGTCGAGCAAGGAGGAAGAGGAAGAAGAAGAGATTCTGGGTGTT TCTTCCGAGACGGTTGATCGGCTAAGGAAGAAGATTTATGAGTATCTTCTAACACACGTTGAATCTGCTGCTGCTGCTCTGGGAGGTAATGGTGGTGCAG GATCACAATCATCGCCAAGGATCCGAACTGTGGACATAAAGCCGAAAAGGTGA
AA sequence Show only first row Show all	>Lus10026806 pacid=23176549 polypeptide=Lus10026806 locus=Lus10026806.g ID=Lus10026806.BGIv1.0 annot-version=v1.0 MANLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATFVSLPEEHDDLILSDKIQLGQFVHVERLEAASPVPVLR GVKPVPGRHPCVGTPEDIVATDSLSFLNNNLEPNSSLKHSDSAKPLRKGVLGNTYPGEKEKFSSRSSSANQEDLNSKKTSSLVRTKSQLSKAHLNLELKR ESLPKLKPTSSRSIPSSPTSCYSLPNSFEKFSSGVKQQAKIKGLDKGSPRMGLAERTSSASGAATARRVPVIKNIVQGIEFGAKALRKSWEGSMEVKKKD SSKLKAAKLELNHEIRSTSVPRKSTSSERSLPRDDTKACAKSCKEENKITVSSKKIVPPGGIMDDQEKFSKHRLSVGKRSSGELANNGLPGNFVKVPINS KRLSEGSVSWTSLPSSLSKLGKEVMKHRDAAQTAAIEAMQEACAAESLLKCLRIYSELKSSAQEDNPQPAVELFLALHTSLNNVRNVTDSLSKMVPLGSS PNSSEDLSQEVQKMTSDRRKHAAYWVQAALSTNLSSFTIFTKEATSTLGPGSTSSVQNQKSSAVNQHLLVLENSSKNAGTKPEAKNRPVVGSKLVATGAF RKQLDPSSTSQKVQPQPPTEWLRGNGLDEAMDLAETLRVDSQNWFLAFVERFLDADVDTSALSDNGQIAGMLTQLKSVNDWLDGIGSSKEEEEEEEILGV SSETVDRLRKKIYEYLLTHVESAAAALGGNGGAGSQSSPRIRTVDIKPKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	0	1
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	1.4	0.9004
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	2.4	0.8953
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	2.8	0.8989
AT2G26680			unknown protein		Lus10043275 [exp]	4.5	0.8933
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	4.9	0.8771
AT5G58300			Leucine-rich repeat protein ki...		Lus10021673 [exp]	7.0	0.8184
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10018921 [exp]	7.7	0.8781
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	8.4	0.8751
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	10.2	0.8714
AT2G26680			unknown protein		Lus10019418 [exp]	10.4	0.8526

Compare expression of checked genes

Lus10026806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.