Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033093 [exp] 51 / 2e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026808 pacid=23176644 polypeptide=Lus10026808 locus=Lus10026808.g ID=Lus10026808.BGIv1.0 annot-version=v1.0 ATGGTTTCTACAATCATTCTCACAGATTCGGATTGTAGGAGATTGCTAGCTGCTTCATCTCTTGTTTGTATCAAGCACATTCGACGTCAAGATAATAGCA CCGCTCATTTTGTGGCACATGCTGGAAAGTCTAACGTTCAAGGCTTGAAGAGTTGCTTTTCTGCTTTGACATTGTACGATGCTAGCTGTGAAGATTTCAA GAAGAGAGGTGAAGGAGGTAGTCAAGGAGGAGGTCTCCCACAGTCAGACATGGACACATTCAAGACTAACCATCACTCTTCTGTCATGTTTATCTCTCCA GAATTTCCTCTCAACTTTTCAAACGGCATAGCCGTTGGAACTCTCACCTCCCTTAACAAGGAGCCTTACTCTTCCGATGAGGAAGCTAATCTGGTCAGCA TTTATGGAAGCTCAACATCAATGAATGTACTATGGGGTTTTTCCTAA
AA sequence Show only first row Show all	>Lus10026808 pacid=23176644 polypeptide=Lus10026808 locus=Lus10026808.g ID=Lus10026808.BGIv1.0 annot-version=v1.0 MVSTIILTDSDCRRLLAASSLVCIKHIRRQDNSTAHFVAHAGKSNVQGLKSCFSALTLYDASCEDFKKRGEGGSQGGGLPQSDMDTFKTNHHSSVMFISP EFPLNFSNGIAVGTLTSLNKEPYSSDEEANLVSIYGSSTSMNVLWGFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026808 [exp]	0	1
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10043176 [exp]	5.7	0.8108
					Lus10032804 [exp]	7.5	0.7955
AT3G54750			unknown protein		Lus10012287 [exp]	9.3	0.8890
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	19.6	0.7227
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	39.1	0.7300
					Lus10033479 [exp]	44.7	0.7509
					Lus10014629 [exp]	106.7	0.6358
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	112.7	0.6263
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	112.9	0.6263
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	113.1	0.6263

Compare expression of checked genes

Lus10026808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.