Plant FIBer expression Database

Lus10026809 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26770 688 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
AT2G40820 453 / 2e-155 unknown protein
AT3G56480 449 / 6e-154 myosin heavy chain-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036073
[exp]
882 / 0 AT2G26770 783 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Lus10027293
[exp]
464 / 4e-160 AT2G40820 614 / 0.0 unknown protein
Lus10038998
[exp]
462 / 3e-159 AT2G40820 611 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G066800
[exp]
727 / 0 AT2G26770 785 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Potri.001G272300
[exp]
709 / 0 AT2G26770 773 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Potri.016G033100
[exp]
522 / 0 AT2G40820 687 / 0.0 unknown protein
Potri.006G035300
[exp]
521 / 0 AT2G40820 681 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10026809 pacid=23176592 polypeptide=Lus10026809 locus=Lus10026809.g ID=Lus10026809.BGIv1.0 annot-version=v1.0
ATGACGAGGGTAGGCCGGGATTACAGAGATACGATGCCTAAAGATGCAGTTCCTGCTGTATCTGCGGATGTAATGTTTGCTTCCAGTCGATTCCCAAACT
ATAAGATGGGGGCCAGCAACCAGATCATTGACCTCAAAGATGACCTTAAACTCAAGTCCATGAAAGAAGTTGTCGCCAGGGAGACTGCTCAGCTCCTGGA
TCAGCAGAATCGTCTCTCCGTTCGCGATCTGGCTGATAAATTTGAGAAGGGCTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACGCAGGGAGGCA
GCCTCTTTGGAGAAACATGTGCTTTTGAAGAAACTTAGAGATGCATTGCAGGCCTTGAGAGGGCGTGTAGCAGGAAGAAACAAGGACAACGTGGAGGAAG
CTATTGCAATGGTGGAAGCCCTAGCTGTTCAGCTAACAGAAAGGGAGGGAGAGTTGATTCAAGAAAAGGCTGAAGTAAAGAAGCTAGCTAGTTTCCTTAA
GCAGGCTTCAGAAGATGCCAAGAGGCTTGTAGATGAGGAAAGAGCTTTTGCTCGAGTAGAAATAGACAGTGCTAGGGCTGCAGTGCAGAGGGTTGAACAA
GCCCTTCAAGAACATGAACGGACATCTGGAGCTTCAGGGAAGCAGGACTTGGAAGAATTGATGAAGGAAGTTCAAGAGGCTAGGAGGATTAAAATGTTGC
ATCAGCCTAGCAAGGTGTGGCTTGGAACATGCTACTACTCTCCTGATCCGATCCGTAACACTCTAGACTGCGTTAGGCATGCTTTGCACAAGTGGAAATT
TCTGATGGAATGGAATGTAGTCAACATTCTTTTTCATCCAAAGGTTATGGACATGGAACATGAGTTACGAGCATTGAGAACTCAGCTAGCTGAGAAGACC
AAACGTGCACTTCAGCTTCAAAAAGAGCTTGTTACTACTAGGAGAGGGGCGCAGAATCCATCAGACTTGTATGAATTGGAGGGCACTGAAGCTTTAGGCT
CATATCTAAGGATCAATTGTTGCTCTGATAACGCTCCAGAACTTACTAATTGCTCAATCCAGTGGTATCGTGTATCATCTGAAGGTGGTAAGAAGGAACT
GATATCAGGTGCTACGAAATATACTTATGCTCCAGAGCCTTCTGATGTTGGACGACTACTGCAAGCTGAATTTATTCTTGGTGACCGGAGAATCACTTTG
ACTACGACTGGCCCAATTGATCCTGCTCCTGGTCTGGGAAGCTATGTGGAGGCACTTGTCCGTAAGCACGACATTGAGTTCAAGGTGGTTGTTACCCAAT
TAAACGGCTCAGAGCATCCTTCAGAGACCATCCACATCTTTCACGTAGGAAAGATGAGGATAAAGCTTTGTAAAGGGTCTACCACAATTGCTAAAGAATA
CTACTGTGCTTCTATGAAGCTGTGTGGAGTTAGAGGAGCTGGAAATGCAGCAGCTCAGGCAGTGTTTTGGCAAGCAAACAAAGAACTATCCTTTGTTCTA
GCTTTCGAATCAGAGAGAGATAGAAATGCAGCTATAATGCTTGCTAAACGGTTTGCTTTCGACTGCAACATCGTGCTTGGTGGTCCTGATGAAAGAGCTA
CTCTAGGGACTTGA
AA sequence
>Lus10026809 pacid=23176592 polypeptide=Lus10026809 locus=Lus10026809.g ID=Lus10026809.BGIv1.0 annot-version=v1.0
MTRVGRDYRDTMPKDAVPAVSADVMFASSRFPNYKMGASNQIIDLKDDLKLKSMKEVVARETAQLLDQQNRLSVRDLADKFEKGLAAAAKLSEEARRREA
ASLEKHVLLKKLRDALQALRGRVAGRNKDNVEEAIAMVEALAVQLTEREGELIQEKAEVKKLASFLKQASEDAKRLVDEERAFARVEIDSARAAVQRVEQ
ALQEHERTSGASGKQDLEELMKEVQEARRIKMLHQPSKVWLGTCYYSPDPIRNTLDCVRHALHKWKFLMEWNVVNILFHPKVMDMEHELRALRTQLAEKT
KRALQLQKELVTTRRGAQNPSDLYELEGTEALGSYLRINCCSDNAPELTNCSIQWYRVSSEGGKKELISGATKYTYAPEPSDVGRLLQAEFILGDRRITL
TTTGPIDPAPGLGSYVEALVRKHDIEFKVVVTQLNGSEHPSETIHIFHVGKMRIKLCKGSTTIAKEYYCASMKLCGVRGAGNAAAQAVFWQANKELSFVL
AFESERDRNAAIMLAKRFAFDCNIVLGGPDERATLGT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26770 SCAB1 stomatal closure-related actin... Lus10026809
[exp]
0 1
AT4G24550 Clathrin adaptor complexes med... Lus10003537
[exp]
2.4 0.8597
AT4G24550 Clathrin adaptor complexes med... Lus10024548
[exp]
2.4 0.8323
AT2G16880 Pentatricopeptide repeat (PPR)... Lus10041421
[exp]
3.9 0.8259
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Lus10007427
[exp]
9.4 0.8167
AT2G23070 Protein kinase superfamily pro... Lus10011526
[exp]
11.5 0.7440
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Lus10026688
[exp]
12.7 0.7873
AT1G20410 Pseudouridine synthase family ... Lus10021236
[exp]
14.1 0.7868
AT1G36050 Endoplasmic reticulum vesicle ... Lus10036449
[exp]
15.1 0.7729
AT1G51710 ATUBP6, UBP6 ubiquitin-specific protease 6 ... Lus10006870
[exp]
15.2 0.7454
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Lus10025070
[exp]
15.5 0.7914

Lus10026809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.