Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 53 / 2e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 46 / 3e-05 F-box family protein (.1) AT2G02030 46 / 4e-05 F-box family protein (.1) AT3G08750 45 / 5e-05 F-box and associated interaction domains-containing protein (.1) AT4G22390 44 / 0.0002 F-box associated ubiquitination effector family protein (.1) AT3G16210 44 / 0.0002 F-box family protein (.1) AT1G15015 41 / 0.0005 F-box family protein (.1) AT1G12870 42 / 0.0006 F-box and associated interaction domains-containing protein (.1) AT3G10240 42 / 0.0006 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036065 [exp] 758 / 0 AT3G23880 55 / 4e-08 F-box and associated interaction domains-containing protein (.1) Lus10006687 [exp] 65 / 2e-11 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 64 / 9e-11 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 63 / 1e-10 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006697 [exp] 63 / 2e-10 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 62 / 4e-10 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10011015 [exp] 61 / 9e-10 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10008870 [exp] 61 / 1e-09 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 59 / 4e-09 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014700 [exp] 81 / 3e-16 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.015G013800 [exp] 74 / 3e-14 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.018G007900 [exp] 69 / 1e-12 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 69 / 1e-12 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 66 / 9e-12 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 66 / 1e-11 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.012G014300 [exp] 63 / 1e-10 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.011G121200 [exp] 63 / 1e-10 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 60 / 2e-09 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 59 / 3e-09 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026816 pacid=23176603 polypeptide=Lus10026816 locus=Lus10026816.g ID=Lus10026816.BGIv1.0 annot-version=v1.0 ATGGTGTCGTCGAGATCGTCATCATTTGTGCTTCCGGAGCACTTGGTGGAAGCAATTCTGGTAAAACTACCAGTTGGATCTTTGATCCATTTCAAGCTTT TGTCGAAGAATTTCAGGGATCTCATCGACAGCCCTCGATTCGTGGCCACACATCTTCAGGCATCGTTGTCGTCACGCCATCAGAAATGCTCTACTGTCCT CCTCGCCGTCCATGACGACTCCCAGGGCATTCGACAAGACACAATGTTGACACTAAGCGAAGAAGAAAAGGGAGGAGAGGTTATTCCTCACAAGGAAGAA GAACCATTGCCGACCAATATTGTCTCCGGCGACATTCATTACATAGATCTTTTGGGTTCTCACAATGGCTTGATATGTTTATGTCTACATTACACCATGG TACGTAACAATAACAACTACTACAACAACAAGAAGATAGTGTTGTGGAACCCTGCAACTAAGCAATCCAGAATCCTCCCTCCTCCACCTCCTCCGCCTTC CTCGTCCCGCGTTTGTGGGGTCGTCGATTTAGGATTCTTGTACAATCACGAAACCGATGATTACATGGTGTCTGGGATCATTGGCCTGATCCACGATGAT GCCGCTATCAACAACCATATAATGAGCTATCAAGTTGACGTTTTCAGCATGCGGCGTTGGAAATGGGAAACATACATATTCGAACAAGAACTAGCGAGTA ATATACCCGCAAATGGATGCATCTCGAGTCTCGGACCTTCCCATTCAGTGGCACTGAAAGGTATAATTTACCGCGTTGTGTCCGTGTTTGCGGACGAAAC TTGTCACAACTTCATGTTGTCAATGAACATGACGAAGAAGAAGGAAAAGATTGTGTTTGACAGGATCGAGTTCCCCGAGACAAACGATGATTGTTGGGTT TCAAACCTTATGGTGTATGGCGAAGGATCACTCGGGTTGTTTAGTAACGTAGGAAGAGAAGAGGATGGATTGTCTTGTTTCAAATGCAACGTGTGGGTAC TGATAGATAATGGCAGTCGTTCATGGAGGAAGCTGTTCACGATATCTGTAAATCACCCGGCATCAATTGATCACCCGATGGGGAGTTGGGGCGATGGGAG AATTATTATTAGAAGAACTGTAGCAAGAGAAGGGAATAGCCCAGGACAACGACGTCGCATCGTTGGCAACGACCTATTTCTGTATGATCATCAAGAAAGT GCTGAAGGAGTGATGAGAGATCTCCCGATTGTGATTGCTGGTTTTGTTTCCCTCAATGCTTGTACTTACATTCAATCTTTAGTTTCTCTACAGCACCACC GTTAG
AA sequence Show only first row Show all	>Lus10026816 pacid=23176603 polypeptide=Lus10026816 locus=Lus10026816.g ID=Lus10026816.BGIv1.0 annot-version=v1.0 MVSSRSSSFVLPEHLVEAILVKLPVGSLIHFKLLSKNFRDLIDSPRFVATHLQASLSSRHQKCSTVLLAVHDDSQGIRQDTMLTLSEEEKGGEVIPHKEE EPLPTNIVSGDIHYIDLLGSHNGLICLCLHYTMVRNNNNYYNNKKIVLWNPATKQSRILPPPPPPPSSSRVCGVVDLGFLYNHETDDYMVSGIIGLIHDD AAINNHIMSYQVDVFSMRRWKWETYIFEQELASNIPANGCISSLGPSHSVALKGIIYRVVSVFADETCHNFMLSMNMTKKKEKIVFDRIEFPETNDDCWV SNLMVYGEGSLGLFSNVGREEDGLSCFKCNVWVLIDNGSRSWRKLFTISVNHPASIDHPMGSWGDGRIIIRRTVAREGNSPGQRRRIVGNDLFLYDHQES AEGVMRDLPIVIAGFVSLNACTYIQSLVSLQHHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10026816 [exp]	0	1
					Lus10000578 [exp]	4.2	0.8334
					Lus10005473 [exp]	58.9	0.7897
AT3G02710			ARM repeat superfamily protein...		Lus10026721 [exp]	124.2	0.7930
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024196 [exp]	124.7	0.7737
AT5G54850			unknown protein		Lus10043054 [exp]	128.5	0.7805
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	202.7	0.7743
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	244.7	0.7628
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10021817 [exp]	274.9	0.7620

Compare expression of checked genes

Lus10026816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.