Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12200 872 / 0 PYD2 pyrimidine 2 (.1) AT4G04955 79 / 1e-15 ATALN allantoinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036064 [exp] 892 / 0 AT5G12200 776 / 0.0 pyrimidine 2 (.1) Lus10025648 [exp] 79 / 2e-15 AT4G04955 716 / 0.0 allantoinase (.1) Lus10018186 [exp] 72 / 5e-13 AT4G04955 648 / 0.0 allantoinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067700 [exp] 908 / 0 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.001G273400 [exp] 893 / 0 AT5G12200 857 / 0.0 pyrimidine 2 (.1) Potri.004G041800 [exp] 84 / 6e-17 AT4G04955 669 / 0.0 allantoinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10026817 pacid=23176642 polypeptide=Lus10026817 locus=Lus10026817.g ID=Lus10026817.BGIv1.0 annot-version=v1.0 ATGGATCTTTTTCGTCTCTTCTCAACAATTTTCCTCTATCTTCTTCTTCTTCTCGTCCATTCCACGTCAGTCTCTCATTCTCATTCCAGCGAGTTCTGCG AAGCTGGAGCTCCTTACGGTTGCGGGATTTCTCCATGGTCGTCGTCGAAGCTGCTGATCCAGGGAGGAACAGTAGTCAACGCTCATCATCAAGAGGTTGC TGACGTTTATATTGAGGACGGGATCATTGTTGCTGTGCAGCCGAATCTCAAGGTTGGGGATGATGTGCATGTGTTGGATGCCACTGGGAAATTCGTCATG CCAGGTGGAATTGATCCTCACACACACCTTGCTATGGAGTTTATGGGTACGGAGACAGTTGATGACTTTTTCAGCGGTCAAGCTGCTGCATTAGCAGGTG GAACAACCATGCATATTGACTTTGTCATACCAGTCAATGGAAGTTTAACTGCTGGTTTAAGCGCTTATGAGAAAAAGGCGCAGAAGTCCTGCATGGATTA TGGTTTCCACATGGCAATTACTAAATGGGATGAAGATGTTTCCAGAGATATGGAAATCATGGTCAAAGAGAAAGGTATCAACTCTTTCAAATTTTTTCTG GCCTACAAGGGATCTCTAATGATTAATGATGAACTTCTATTGGATGGGTTGAAGAGGTGTAAGTCTCTTGGTGCATTAGCCATGGTTCATGCTGAAAATG GAGATGCTGTATTTGAGGGGCAGAAAAGAATGATAGAACTAGGCATCACTGGTCCAGAGGGACATGCACTTTCGAGACCTCCAGTGTTGGAAGCAGAGGC AACTGCCCGAGCGATTCGTTTAGCCAGTTTTGTCAACACGCCTCTCTATGTCGTTCATGTGATGAGCATTGATGCAATGGAAGAAATAGCTAAAGCCCGT ATATCAGGTCAAAGAGTTGTTGGGGAGCCTGTTGTTTCTGGACTACTCCTGGATGACTCTAAGCTTTGGAACTCAGACTTCAACATTGCCTCAAGGTATG TCATGAGCCCTCCCATTAGGGCTTCTGGACATGCAAAGGCCCTGCAAGCTGCACTTTCATCAGGGATTCTTCAACTTGTTGGGACGGATCATTGTACATT TAACTCTACTCAAAAAGCATTTGGAATTGATGATTTCCGCAAAATACCAAATGGTGTTAATGGTATTGAGGAGAGGATGCACTTAGTTTGGGATACTATG GTGGAAACTGGCCAAATATCAGTCACTGACTTTGTCAGAGTAACAAGCACTGAATGTGCCAGGATCTTCAATATATATCCAAGAAAAGGAGCTATTCTTG CTGGTTCTGATGCAGACATAATTATTCTCAATCCAAATCGTAGTTTTGAGATAAGTGCCAAGTCTCACCACTCCAAAACTGACACCAACGTCTATGAGGG TCATAGGGGCAAGGGGAAGGTTGAGGTAACAATTGCTGGAGGAAGAGTAGTTTGGATAAATGATGAACTAAAAGTAACCCCTGGTGCTGGAAGATACGTA GAAATGCGTGCTTTCAACTATCTTTTTAGCGGAAATGACAAAGCAGATAATACATATCTAGCCTCTCTGAATGCTCCTGTAAAGCGTTCCATATAA
AA sequence Show only first row Show all	>Lus10026817 pacid=23176642 polypeptide=Lus10026817 locus=Lus10026817.g ID=Lus10026817.BGIv1.0 annot-version=v1.0 MDLFRLFSTIFLYLLLLLVHSTSVSHSHSSEFCEAGAPYGCGISPWSSSKLLIQGGTVVNAHHQEVADVYIEDGIIVAVQPNLKVGDDVHVLDATGKFVM PGGIDPHTHLAMEFMGTETVDDFFSGQAAALAGGTTMHIDFVIPVNGSLTAGLSAYEKKAQKSCMDYGFHMAITKWDEDVSRDMEIMVKEKGINSFKFFL AYKGSLMINDELLLDGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEAEATARAIRLASFVNTPLYVVHVMSIDAMEEIAKAR ISGQRVVGEPVVSGLLLDDSKLWNSDFNIASRYVMSPPIRASGHAKALQAALSSGILQLVGTDHCTFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM VETGQISVTDFVRVTSTECARIFNIYPRKGAILAGSDADIIILNPNRSFEISAKSHHSKTDTNVYEGHRGKGKVEVTIAGGRVVWINDELKVTPGAGRYV EMRAFNYLFSGNDKADNTYLASLNAPVKRSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	0	1
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	2.2	0.9302
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	2.8	0.9094
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	3.0	0.9093
AT1G04555			unknown protein		Lus10023715 [exp]	3.2	0.9197
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10022994 [exp]	3.5	0.9160
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	5.5	0.9129
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	7.5	0.9147
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	8.0	0.8864
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	8.4	0.9096
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	9.2	0.9131

Compare expression of checked genes

Lus10026817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.