Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12220 313 / 4e-97 las1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036063 [exp] 981 / 0 AT5G12220 397 / 9e-131 las1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273600 [exp] 541 / 0 AT5G12220 399 / 1e-131 las1-like family protein (.1.2) Potri.009G067800 [exp] 526 / 4e-179 AT5G12220 385 / 2e-125 las1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04031 [flax] [poplar] Las1 Las1-like
Representative CDS sequence Show only first row Show all	>Lus10026818 pacid=23176553 polypeptide=Lus10026818 locus=Lus10026818.g ID=Lus10026818.BGIv1.0 annot-version=v1.0 ATGTTCTTACTGTCTTCATCTGTTTTTCGCCCAGTTTTCCTGACGAAGCAAGTTACAGCTCTTCTTCTTCACTGCTCGATTAAGTATTCAGACACCTGTG AACTTCAAGAAGCCATTAAGAGCAGAGCGCTTTATTTTGCTTCGGTGAGTTTTGTAATGGAGCACGTTCGGGAATTGGGAAACATACTTGTCGATTGCGT CGTCGATCACGGGACTACAACTTCGTTGTCACCGTCTGGTTACAGATTGGTGCCCTGGTTGAACTGGGAGGAATGGGAGTGCGTTAGGGATTCTCTTTTC TCTGACTCGCCTCACAAGGTTTCCTTTGCTCTTCATAGAATTTCAACTTGGCGAAGTAGAGGATGTCTACCTGTTGTGATCGATGTAACTGCTGCAATAA TTGAAATTCAGCTAAAGGATCCTCTATATAGAAAGGACCTTCCGCATGATGCAATCCATTCAGAGCAAATGCTGACGATGATATATTGCATGGCAATCTT GAGGCGAGTTGCTATTATTTTTCTGATTCATTTTCAAGCTTCTGCGTGTGTTGCTCTGGTTTCGATTCGGTCTCATACTATGTTTGGACATTATGTCCAT GTTAAACGCTGGAACTTGGTTATGAGGGATATCGAGATTGACATTGACACATTGCTGGTGAATTGTGTCATTGAGAAGACACGTAAGAAGAATGAGTCTT CTATTGCTGAGGCTGCAGGTGCAATTGGCATACCACGTTCATTAATTGATATTCGACATGAGGGTTCTCACCGAGATCTCCCTGCTTTACCTTTGGTCCG AGATTCTGCGGCTAAGGCAATTGACTGGTTGAAACAGTACTACTGGGAGCCTCAGGCAGAGCAGATTCCATCTCAAAGGGATGGAGCTAGCATTAGGAAA GAAATAAAATTGAAACTCCGTGAATTGGCTGCATGCTTGAAAGTTAAGCAGAGTCCTCGAACCTGTTCTTTAGCATCTAAGGGGAAAGCAGGTTCCAAGA AGCCAGTTCACAAGAACATTAAAACCCTTGTTCATATATATTCTTCCTTCTCTTCGGAAGTGCTTTCTGTGCTACTAGACTTCTTGCTCAAGGCCTTGGA TTCTTCAAACTTGGTTTGTCATCCAAAGGAATATGGGATTGGCGAAAAGACTATGTTGGACATTTGGAAGCTTATGATAACAAAATTTTCTAAGAAAGAA CCAGAGCTACTTCTTACACTTATAAATGCAGTCTTAAACGTGATCGAGAGTCAAGATTATGTGGACTATATAATAGGGATGCGTCCTGCGTCAACAGAGA ACAGCTTGCGGTCCACTCAAACTGAAGGACTTTGTTCAGTGTTCTTATGGCTTGTAGGACAGCTCAATGGTCTGAAGACTCTCTTTTCCAAAGATGCAAA AGCTGAAACCAAAATTTCCGCTACAGGAATGAGCATGTCAAATGCAATGCTGACTGAGGTCCTACGTAAATGTCTCCTTACATCGTCTTGTGGTAACAAG CAGCTTATGGATGGGGCGAAGCTTCTCGTTCAGCTTATTGGAAATTTCTCTTTGAAAGAGAAACTCGATAAATTAAGCTCACATTACAAGTCAGAGTCTG CTTTTCCTGAGGATGCCAAGTATTGTAAAAGTCCTTATCAAGTTCTGATCCAGCATGAAAAGACTCTCTGTCAGGCTACAGAGAAGTTAGAGAAGTTACA ACGTCGTAGAATTCAGGGTCAAGCTTTAACAATAGCAGATGGTGATGCTGCTGCTGATTCAGGAAGATGGGTTGTTGCGAAGTCGTGGAATCCATGCCCT GTGGGGATGCTACCAGGTGATCTTGGATCGTCTGGACGCCTTCCTGTCCTTGACTGCGAAGATGGTGGCGAGAAGTGCATGACAGTTCCATTGCTTTCGC CAGAAAAGGATAAGACAATGGAACTGGAAAAGAACTGCGACAACATTAAACAATGTTTTGAGTCCTCGGGCAGGAAGAGCGGTAGTAAGAGAGAAGGAAG CTGTGAAATTTATACAGAAGGTAGGTCAGATGTTAAGAGGATAAGAGAGACTAGTACTAGTACATGGGAGAAGTACAGTTGGAATGATGAGATGATAACA GGGCGGTTGATGTTAGATGGGGTGTGGAAGAAAGTAGGCGAGGAAGAGCTTCTTGGAATGAGGTCTGCTGTTAGAATTTTGATTTGA
AA sequence Show only first row Show all	>Lus10026818 pacid=23176553 polypeptide=Lus10026818 locus=Lus10026818.g ID=Lus10026818.BGIv1.0 annot-version=v1.0 MFLLSSSVFRPVFLTKQVTALLLHCSIKYSDTCELQEAIKSRALYFASVSFVMEHVRELGNILVDCVVDHGTTTSLSPSGYRLVPWLNWEEWECVRDSLF SDSPHKVSFALHRISTWRSRGCLPVVIDVTAAIIEIQLKDPLYRKDLPHDAIHSEQMLTMIYCMAILRRVAIIFLIHFQASACVALVSIRSHTMFGHYVH VKRWNLVMRDIEIDIDTLLVNCVIEKTRKKNESSIAEAAGAIGIPRSLIDIRHEGSHRDLPALPLVRDSAAKAIDWLKQYYWEPQAEQIPSQRDGASIRK EIKLKLRELAACLKVKQSPRTCSLASKGKAGSKKPVHKNIKTLVHIYSSFSSEVLSVLLDFLLKALDSSNLVCHPKEYGIGEKTMLDIWKLMITKFSKKE PELLLTLINAVLNVIESQDYVDYIIGMRPASTENSLRSTQTEGLCSVFLWLVGQLNGLKTLFSKDAKAETKISATGMSMSNAMLTEVLRKCLLTSSCGNK QLMDGAKLLVQLIGNFSLKEKLDKLSSHYKSESAFPEDAKYCKSPYQVLIQHEKTLCQATEKLEKLQRRRIQGQALTIADGDAAADSGRWVVAKSWNPCP VGMLPGDLGSSGRLPVLDCEDGGEKCMTVPLLSPEKDKTMELEKNCDNIKQCFESSGRKSGSKREGSCEIYTEGRSDVKRIRETSTSTWEKYSWNDEMIT GRLMLDGVWKKVGEEELLGMRSAVRILI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	0	1
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	3.2	0.8619
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	5.8	0.8810
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014245 [exp]	6.0	0.8136
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	6.3	0.8216
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	12.2	0.8209
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	12.4	0.8251
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	12.5	0.7872
AT3G49990			unknown protein		Lus10010625 [exp]	18.0	0.8219
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	33.5	0.8196
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	33.5	0.7671

Compare expression of checked genes

Lus10026818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.