Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 163 / 1e-49 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 139 / 4e-40 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT2G41690 135 / 7e-40 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G36990 135 / 2e-39 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT1G32330 134 / 2e-37 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 134 / 2e-37 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G62020 129 / 5e-37 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT5G16820 131 / 2e-36 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 130 / 3e-36 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G03720 129 / 4e-36 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036062 [exp] 206 / 9e-67 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 161 / 3e-48 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 158 / 3e-47 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 144 / 3e-42 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10019348 [exp] 142 / 3e-42 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10024508 [exp] 143 / 2e-41 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10030956 [exp] 142 / 1e-40 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 140 / 8e-40 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10011065 [exp] 138 / 3e-39 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273700 [exp] 175 / 2e-55 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 172 / 4e-54 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 163 / 2e-49 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 160 / 1e-48 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 143 / 3e-42 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 142 / 3e-42 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.016G056500 [exp] 135 / 3e-40 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.001G138900 [exp] 139 / 2e-39 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 139 / 3e-39 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.014G141400 [exp] 136 / 9e-39 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10026819 pacid=23176540 polypeptide=Lus10026819 locus=Lus10026819.g ID=Lus10026819.BGIv1.0 annot-version=v1.0 ATGCAGGGATTGTACAACAAGGGCGGTGGTGGAGTGGTGGCGCCATTCTTAACAAAGACATACAAGCTGGTGGATGATCCAATGACAGACCACATTGTGT CTTGGGGAAGCAATGATATGAATGATCCAATGGCGGCCATGATGATGATGAGTACATTTGTGGTATGGAGACCTCCAGAGTTTGCAAGAGATCTCCTCCC TAACTACTTCAAACACAACAACTTCTCCAGTTTCGTCCGCCAGCTCAACACCTATGGATTCAAGAAGGTAGCAGCAGAAAGATGGGAGTTTGGGAACGAC TACTTCAGGAAAGGTGCAAAGCAGTTGCTCTCCCATATTCACCGTAGAAAATCACCCCATCATTATAACGATCATCATCAGCATGACTTCATATTTCAGC TCCCACACCATCACATATTCCTGCCATCACCACCGCCCCCGCCACCAGCAGTACATTATGTATTATCTCCGGCGACCGTTCAGATGATGATGAGATGA
AA sequence Show only first row Show all	>Lus10026819 pacid=23176540 polypeptide=Lus10026819 locus=Lus10026819.g ID=Lus10026819.BGIv1.0 annot-version=v1.0 MQGLYNKGGGGVVAPFLTKTYKLVDDPMTDHIVSWGSNDMNDPMAAMMMMSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAAERWEFGND YFRKGAKQLLSHIHRRKSPHHYNDHHQHDFIFQLPHHHIFLPSPPPPPPAVHYVLSPATVQMMMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026819 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026820 [exp]	1.7	0.8476
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	11.0	0.8240
AT2G35730			Heavy metal transport/detoxifi...		Lus10000263 [exp]	15.5	0.7625
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	16.4	0.8043
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	16.8	0.8133
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	19.8	0.8024
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	27.6	0.8024
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006696 [exp]	29.6	0.7907
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	29.7	0.7897
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10017558 [exp]	31.4	0.7687

Compare expression of checked genes

Lus10026819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.