Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036060 [exp] 461 / 1e-163 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068200 [exp] 69 / 8e-13 AT2G26530 49 / 3e-06 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.001G274000 [exp] 58 / 3e-09 AT2G26530 61 / 3e-10 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026821 pacid=23176636 polypeptide=Lus10026821 locus=Lus10026821.g ID=Lus10026821.BGIv1.0 annot-version=v1.0 ATGTTATCTCCCAAGAAAGCTATGTCCATGGATTTCCCCGCCGACGATAATTCCTCCTACATGACCGCCGCCACGTCCAGCTCCTCCTCAAGGTTCGCAG ATAGTTTCCGTTCCTTCGACCCGCCGTCGACGAAATCCACCTCCTCCCCCAATTACAATTTCACAGTCGACGATTTCGAATCCTCCACCGTCAGCGCTCG TTTCTACGACGAATGCAGCTACCTCGACGTCCATTCCGATTTCGAAACCTGCTCCGACACCCAGCACCTCATCATGCTGCATCGTGAACAGCGAACGGTC CAATTGAAGCCTCCACCTGCTCGCCAGTCCTTCGGAGGAGCAGGAGAGACAGGGAAAAGGTCATCTACGCCTACGGGGAGGAGATCCGGATTACACGTCC ACCGTCGGAGCCTTTGGAATGACGATTTTGACCCTTTCGCGGCCGCCCTTAAAAACGTCAAGGAAGGAGGAGAGACCGCCGGAAAAAACAGAGGCGGCGT GAATCATAGACGGGTGATGTCGGATTCTCCTGGGTCTGATGAAGTAAAGCCCAAGCCCAAGCCCACGCTGAACTGGGTTCGCAGCATGCCGAGAGTAAGA TCTGAAAGCCCAATACCAAGTCCTAGCCCGATGAAGTCGTCTCCGCAGCCCAAAGGGGTGCTGTACGCGAGACACACCAGGCTGGTTAAAATGGACTCCA CAAAGGCCCATGATGACTATGAGGAAGGAATGATGGCTTCCTGTAATTGTCATGCTGGGAGCAAGAGGGAAATGTTAAGGAGCCTCATGGTATCAATGAA GGGAAGAGGTGAGGATGAGGAGGATGCGGAATTGAAGAAGAAAGAAGTCGAACCGACGCGGACAAAAATGCCGAGGAGGAAGAGGTTAATGAAGAAGTTG AGCTTTAAGTCGGGCAGACGAGATGTTGTCGACGATGAGAAGAAACGTATATCGGAAAATGCATCGGATGCCCTTGGGATGGGGAAGAAATTGGTGCAGA CTAGGAGCAACATGCTTCTTTGCGTTGGTTTGAAGAACAAGATTTACGCTAGTTGA
AA sequence Show only first row Show all	>Lus10026821 pacid=23176636 polypeptide=Lus10026821 locus=Lus10026821.g ID=Lus10026821.BGIv1.0 annot-version=v1.0 MLSPKKAMSMDFPADDNSSYMTAATSSSSSRFADSFRSFDPPSTKSTSSPNYNFTVDDFESSTVSARFYDECSYLDVHSDFETCSDTQHLIMLHREQRTV QLKPPPARQSFGGAGETGKRSSTPTGRRSGLHVHRRSLWNDDFDPFAAALKNVKEGGETAGKNRGGVNHRRVMSDSPGSDEVKPKPKPTLNWVRSMPRVR SESPIPSPSPMKSSPQPKGVLYARHTRLVKMDSTKAHDDYEEGMMASCNCHAGSKREMLRSLMVSMKGRGEDEEDAELKKKEVEPTRTKMPRRKRLMKKL SFKSGRRDVVDDEKKRISENASDALGMGKKLVQTRSNMLLCVGLKNKIYAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026821 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10028285 [exp]	9.1	0.6857
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	11.3	0.6934
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10022010 [exp]	25.3	0.5988
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	27.3	0.5984
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	32.7	0.6186
AT2G35658			unknown protein		Lus10000594 [exp]	34.9	0.5960
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	40.9	0.6283
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	76.3	0.5900
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	120.8	0.5788
					Lus10006296 [exp]	122.1	0.5788

Compare expression of checked genes

Lus10026821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.