Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3) AT1G14980 81 / 2e-18 CPN10 chaperonin 10 (.1) AT1G23100 77 / 4e-17 GroES-like family protein (.1) AT1G79915 48 / 6e-06 Putative methyltransferase family protein (.1) AT5G20720 44 / 0.0001 CHCPN10, ATCPN21, CPN21, CPN20 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) AT2G26200 42 / 0.0006 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G63855 40 / 0.0006 Putative methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036057 [exp] 322 / 8e-110 AT2G26810 192 / 5e-62 Putative methyltransferase family protein (.1.2.3) Lus10036055 [exp] 96 / 1e-23 AT1G23100 134 / 7e-42 GroES-like family protein (.1) Lus10016196 [exp] 46 / 4e-05 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10031894 [exp] 44 / 0.0001 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10013607 [exp] 42 / 0.0007 AT5G20720 373 / 5e-132 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10021244 [exp] 42 / 0.0007 AT5G20720 372 / 1e-131 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10024993 [exp] 42 / 0.0008 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068400 [exp] 282 / 3e-93 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.009G068900 [exp] 81 / 1e-18 AT1G14980 161 / 3e-53 chaperonin 10 (.1) Potri.001G274300 [exp] 81 / 1e-18 AT1G14980 165 / 6e-55 chaperonin 10 (.1) Potri.008G130500 [exp] 80 / 2e-18 AT1G23100 157 / 7e-52 GroES-like family protein (.1) Potri.010G111600 [exp] 78 / 2e-17 AT1G23100 155 / 1e-50 GroES-like family protein (.1) Potri.001G181200 [exp] 45 / 5e-05 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.006G138600 [exp] 42 / 0.0006 AT5G20720 395 / 1e-140 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.006G225600 [exp] 42 / 0.0006 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G109000 [exp] 42 / 0.0006 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.006G100100 [exp] 42 / 0.0007 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase CL0296 [flax] [poplar] GroES PF00166 [flax] [poplar] Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10026822 pacid=23176588 polypeptide=Lus10026822 locus=Lus10026822.g ID=Lus10026822.BGIv1.0 annot-version=v1.0 ATGGCGAAGCGTTTGATTCCGGCCTTGAATCGGGTTTTGATCGAGAAGATTGTTCCTCCTTCCAAAACCACTGCTGGAATCCTTCTCCCGGAAAAGACTT CCAAGGTACCCGTGTCTCTCTTCTTGCTCCATACCTCTCTTCAACCTCGATGTTGGTTGATGCATAACAGCTGCTCGATATTAGCTTATCCTTTTAGCTC GCGATCTGATCTAGGGATTACTTTTTGTGCTTCCGTACTGATTGTACACGTGGTCTTCTGCTTCGTTTCGTTGTTAAATTCCGGGGGAGCTTCAGATTTG TGCAGTGGCTACTTCTCGCTGTATATTTTTAGCCTGAGGTCCCATGAATATGGCAGGGGATTTCATTCTAAGATTTATGTGAGAGTGGTAACGACCAAAT TTATACAGTGCAGTTCAGGTGATAATGATGCTGTTGTTGCTGTATCTGGGTACAATTTTAGGGTTAGGTTACGATTCAGCCCTATACTCAACTCTGGCAA AGTAATTGCAGTTGGACCTGGGATTCGTGACAAGGAGGGACACCACATCCCTGTGGCTGTGAAGGAAGGAGACACTGTTCTTTTGCCCGAGTATGGTGGC ATGGAAGTGAAGCTCGCTGATAAAGATCATTACAGAGCCGAGTTTCAAGTGAAGCTTAGAGGTCGAATTCGAATACGGCGAAATATGAGAGAAAGCAGTG AAGAAAACATCAATCAATCGGTGGAGACGGCTGCTCGTAGAAGAATGAGAACAGCGAATGAAGGAAAAGAGGAAGAAGAAGAAGAGATTGTTTGTTTAGA CGAATCGTTCTTCATTAATGACGATTACCAGTTGACGAATTTCACGTTCGGCTCTCACTCTCTTCAGTTGTTGTGTCTTCAGACTGCTTCTAGACAACTG GTATGGCCTGGTGCCACCCTCTTAAACAATTATCTATCAGAAAATGCAGAGATTCTACGGGGATGTTCTGTGCTCGAATTAGGGTCTGGTGTGGGAGTCA CTGGGATACTTTGCAGTAGATTTTGTAAAAGAGTCGTGTTGACGGACCATAATAATGAAATTCTTAAGAAGAACGTAGATATCCAGTCATCCTCTGAGAA TCCTGATTGTTGTGCTGAATTACATGCTGAGAAGCTAGACTGGGGAAACTCAGATCAACATTTACGTTTTCAGCAATCAAGCATCCCTCTGCTTTTCGAT ACTGTGGAACAGTTACTTCGCTTTCAAAGAGGCAAATGCAGATTCATACTGGCCTATGTATCCCGGGCTAAAGTCATGGACTCTTTAGTAGTGAAAGAAG CCACTCAACATGGATTGAAAGTGCATGAAGTAGCCGGGACCCGATCCATTGTACGCAGTCATGAAGGCATGATTTTCGACATTTCTCTCCTGTAG
AA sequence Show only first row Show all	>Lus10026822 pacid=23176588 polypeptide=Lus10026822 locus=Lus10026822.g ID=Lus10026822.BGIv1.0 annot-version=v1.0 MAKRLIPALNRVLIEKIVPPSKTTAGILLPEKTSKVPVSLFLLHTSLQPRCWLMHNSCSILAYPFSSRSDLGITFCASVLIVHVVFCFVSLLNSGGASDL CSGYFSLYIFSLRSHEYGRGFHSKIYVRVVTTKFIQCSSGDNDAVVAVSGYNFRVRLRFSPILNSGKVIAVGPGIRDKEGHHIPVAVKEGDTVLLPEYGG MEVKLADKDHYRAEFQVKLRGRIRIRRNMRESSEENINQSVETAARRRMRTANEGKEEEEEEIVCLDESFFINDDYQLTNFTFGSHSLQLLCLQTASRQL VWPGATLLNNYLSENAEILRGCSVLELGSGVGVTGILCSRFCKRVVLTDHNNEILKKNVDIQSSSENPDCCAELHAEKLDWGNSDQHLRFQQSSIPLLFD TVEQLLRFQRGKCRFILAYVSRAKVMDSLVVKEATQHGLKVHEVAGTRSIVRSHEGMIFDISLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26810			Putative methyltransferase fam...		Lus10026822 [exp]	0	1
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	6.2	0.7647
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	23.9	0.7252
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	28.0	0.7469
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	30.5	0.7142
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	31.2	0.6568
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	33.0	0.7142
AT3G47630			unknown protein		Lus10024227 [exp]	33.8	0.7217
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	40.5	0.7126
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	43.0	0.7100
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	48.3	0.7096

Compare expression of checked genes

Lus10026822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.