Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26800 560 / 0 Aldolase superfamily protein (.1.2.3) AT5G23020 42 / 0.0007 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036056 [exp] 701 / 0 AT2G26800 659 / 0.0 Aldolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068600 [exp] 582 / 0 AT2G26800 575 / 0.0 Aldolase superfamily protein (.1.2.3) Potri.006G036800 [exp] 474 / 3e-166 AT2G26800 471 / 4e-165 Aldolase superfamily protein (.1.2.3) Potri.001G274004 [exp] 183 / 1e-56 AT2G26800 186 / 2e-58 Aldolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00682 [flax] [poplar] HMGL-like HMGL-like
Representative CDS sequence Show only first row Show all	>Lus10026823 pacid=23176564 polypeptide=Lus10026823 locus=Lus10026823.g ID=Lus10026823.BGIv1.0 annot-version=v1.0 ATGTCAGTTGTTGATATAATGCTAGCAAAGAAGGCCATGCATCTCTGTTCATGGCAGAGAACTAAACTGTTGCGTGCATCGATTCCAGTTTCCCTTCTTG AACTTTCTTCAGCAATGTCGAGTTTGGAGGAGCCGCTTGGCTTTGACAAGTTGCCTAGCATGAGTACCATTGACCAGATTCAGAGGTTTTCATCTGGTGC TTGCCGGCCCAGTGGTGATGATTTGGGAATGGGACATTGTTGGATCGATGGAAGGAATTGCAGCTCATCCAACAGTTGGATGACTTTGACTATACACGAG ACACCTTTCCCTGGAGAAGGCAAACAAAAGGTCTGGCAAATGGAGAATCCTTCATGCGAAGGACTAGGAGCACGGTTACTGAAAGGTATACCGAAATTCG TGAAGATAGTAGAAGTTGGACCGAGGGACGGATTACAAAATGAGAAACATATTGTGCCTACGGATGTCAAGATTGAATTGATTCGTAGGCTAGTATCTTC TGGCTTGCCAGTAGTGGAAGCTACTAGTTTTGTATCACCTAAATGGGTTCCTCAGCTTGCAGATGCAAGAGACGTGATGAAAGCAGTACATAGTTTGGAG GGCTCCAGGTTACCTGTTCTGACACCTAACTTAAAGGGATTTGATGCTGCTATCGCATCTGGGGCTAAGGAAGTAGCCATTTTTGCATCAGCTTCTGAGG CATTTTCAAAGTCCAATATTAACTGTAGCATTGAAGAAAGCCTTGTTCGTTATCGCACTGTTACCCTAGCAGCAAAAGAACACTCTATCCCTGTTCGTGG ATATGTGTCATGTGTTGTTGGATGTCCGGAAGAAGGGGCAGTATGTCCTACCAAAGTAGCCTATGTAGCAAAAGCGCTTTATGAGATGGGTTGCTATGAA ATTTCTCTGGGAGATACAGTTGGTGTTGGTACACCTGGAACCGTTGTGCCAATGCTTGAAGCTGTATTGGCAGTTGTTCCCGCAGAGAACCTTGCTGTCC ACTTCCATGATACATACGGGCAGTCTCTTCCAAATATTTTAGCATCTCTCCAGATGGGTATTAGCACGGTGGACTCCTCGATTGCTGGTTTGGGCGGGTG CCCGTATGCTAAGGGAGCATCGGGGAATGTTGCGACAGAAGATGTTGTGTACATGCTTAACGGCCTCGGGGTGAAGACAAATGTGGATCTTACGAAGCTC CTCTCAGCGGGGGAGTTCATAAGCAAGCATTTAGGCCGGGCACCGGGATCGAAGGCAGCCATTGCTTTGAGCCGCGTCATAGCTGATGCATCCAAAATTT GA
AA sequence Show only first row Show all	>Lus10026823 pacid=23176564 polypeptide=Lus10026823 locus=Lus10026823.g ID=Lus10026823.BGIv1.0 annot-version=v1.0 MSVVDIMLAKKAMHLCSWQRTKLLRASIPVSLLELSSAMSSLEEPLGFDKLPSMSTIDQIQRFSSGACRPSGDDLGMGHCWIDGRNCSSSNSWMTLTIHE TPFPGEGKQKVWQMENPSCEGLGARLLKGIPKFVKIVEVGPRDGLQNEKHIVPTDVKIELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMKAVHSLE GSRLPVLTPNLKGFDAAIASGAKEVAIFASASEAFSKSNINCSIEESLVRYRTVTLAAKEHSIPVRGYVSCVVGCPEEGAVCPTKVAYVAKALYEMGCYE ISLGDTVGVGTPGTVVPMLEAVLAVVPAENLAVHFHDTYGQSLPNILASLQMGISTVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLTKL LSAGEFISKHLGRAPGSKAAIALSRVIADASKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031181 [exp]	1.4	0.9592
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	2.4	0.9406
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	4.5	0.9294
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	6.2	0.9068
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	10.1	0.8965
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	11.6	0.9189
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	16.1	0.9365
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	17.7	0.9217
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	18.6	0.9244
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	23.2	0.9194

Compare expression of checked genes

Lus10026823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.